Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g01436 | ATGGCGCCAATCATTCCCCCATCTCTCCCCAACAAGTTCCTCCCTCTTTTCCTCCTCCTTCTCCACCTCGGCTGCTTCCTTCTCACCACCGCCTCTCCCCGCCCCCGCCCCCGCCCCCGCCCCCGTCCTACCCCCTCCTGCTTCAAGCCCCGCAAGTCCTTATCCTCCTCTTTCTCTTTTCTCAAACGAATCTTCTCTTCCAAAACCTCTACCATCGCAATCGACACCGCTCGCCCTCCTTCCACTCCCGCTAGATCATCGCAGCACTCCATCCTCACCCTCGTCCAACCCGAGATTCCTCCTCCTTCCCCCACTATCCAGACTCATCCTCAGGATTCAGATATCACTGCGGCAGAGACTGATCAATTCTTCCCCCTTCGTAACGATATCTTCCCCTGTACTGCTTGCGGCGAGATTTTCCCCAAATCCCAGCTCCTCGAACAGCATCAATCCATCAAACACGCTGTATCCGAGCTTGCCGATTCCGATTCCGGCAAGAATATCGTTCGGATTATTTTCGAAACCGGATGGACGAGTAGAGAAAAAAGTCCTAAAATCCTTCGAATCTTGAAAATCCATAACAGTCAGAAGATTCTCTCCAGATTTGAAGAGTACAGAGAATCGGTGAAGGCGAAAGCGGCCAGAAACGGCGGCGTTAAGCGGCGGGATGAGCGGTGCATTGCCGACGGAAACGAGCTTTTAAGGTTTCACTGTTCGACGTTTTTATGCGATTTGGGGCAAAACGGTAATTCGAGTATTTGCGGGCAGCAATTTTGTAGTATTTGTGGGATAATTAAATCAGGATTTTCACACAAGTTGGACGGAATTTCGACGGTGGCGAATAGCTGGAGGGCACACGTGGCGATCCCAGAGGACATCGAAGAGGAATTCAAGTTTCTCAACGTGAAGCGGGCGATTTTGGTTTGTCGGGTCGTAGCGGGTCGGGTTGGGTCCGACGCCGATGAGCCGGAAAAAGAGGGCGGAGGGTTTGATTCCGTAGTCGGAAGGACTGGGAGCGGGGCCCAGACCACGTTGGATGAAGAAGAGCTTTTGGTTTTTAATCCAAGGGCTGTGCTCCCCTGCTTCGCCATTGTATACGAAATCTGA | 1107 | 52.48 | MAPIIPPSLPNKFLPLFLLLLHLGCFLLTTASPRPRPRPRPRPTPSCFKPRKSLSSSFSFLKRIFSSKTSTIAIDTARPPSTPARSSQHSILTLVQPEIPPPSPTIQTHPQDSDITAAETDQFFPLRNDIFPCTACGEIFPKSQLLEQHQSIKHAVSELADSDSGKNIVRIIFETGWTSREKSPKILRILKIHNSQKILSRFEEYRESVKAKAARNGGVKRRDERCIADGNELLRFHCSTFLCDLGQNGNSSICGQQFCSICGIIKSGFSHKLDGISTVANSWRAHVAIPEDIEEEFKFLNVKRAILVCRVVAGRVGSDADEPEKEGGGFDSVVGRTGSGAQTTLDEEELLVFNPRAVLPCFAIVYEI* | 369 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 12247447 | 12248553 | - | CsaV3_6G016340.1 | Csa06g01436 | 533063 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g01436 | 368 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 133 | 154 | IPR013087 | - | |
Csa06g01436 | 368 | SUPERFAMILY | ADP-ribosylation | 157 | 367 | - | - | |
Csa06g01436 | 368 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 131 | 159 | IPR013087 | - | |
Csa06g01436 | 368 | Gene3D | - | 173 | 368 | - | - | |
Csa06g01436 | 368 | MobiDBLite | consensus disorder prediction | 31 | 52 | - | - | |
Csa06g01436 | 368 | PANTHER | NUCLEIC ACID BINDING PROTEIN | 10 | 366 | - | - | |
Csa06g01436 | 368 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 10 | 366 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa05g00403 | Csa-Chr5:2635203 | Csa06g01436 | Csa-Chr6:12247447 | 2.58E-35 | dispersed | |
Csa05g01505 | Csa-Chr5:17444431 | Csa06g01436 | Csa-Chr6:12247447 | 1.14E-64 | dispersed | |
Csa06g01436 | Csa-Chr6:12247447 | Csa06g03559 | Csa-Chr6:28879871 | 4.21E-45 | dispersed | |
Csa06g01436 | Csa-Chr6:12247447 | Csa03g00581 | Csa-Chr3:5040183 | 1.66E-55 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32017 | None | None | None | None | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g01436 | - | - | csv:101205506 | 684.1 |