Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01436 ATGGCGCCAATCATTCCCCCATCTCTCCCCAACAAGTTCCTCCCTCTTTTCCTCCTCCTTCTCCACCTCGGCTGCTTCCTTCTCACCACCGCCTCTCCCCGCCCCCGCCCCCGCCCCCGCCCCCGTCCTACCCCCTCCTGCTTCAAGCCCCGCAAGTCCTTATCCTCCTCTTTCTCTTTTCTCAAACGAATCTTCTCTTCCAAAACCTCTACCATCGCAATCGACACCGCTCGCCCTCCTTCCACTCCCGCTAGATCATCGCAGCACTCCATCCTCACCCTCGTCCAACCCGAGATTCCTCCTCCTTCCCCCACTATCCAGACTCATCCTCAGGATTCAGATATCACTGCGGCAGAGACTGATCAATTCTTCCCCCTTCGTAACGATATCTTCCCCTGTACTGCTTGCGGCGAGATTTTCCCCAAATCCCAGCTCCTCGAACAGCATCAATCCATCAAACACGCTGTATCCGAGCTTGCCGATTCCGATTCCGGCAAGAATATCGTTCGGATTATTTTCGAAACCGGATGGACGAGTAGAGAAAAAAGTCCTAAAATCCTTCGAATCTTGAAAATCCATAACAGTCAGAAGATTCTCTCCAGATTTGAAGAGTACAGAGAATCGGTGAAGGCGAAAGCGGCCAGAAACGGCGGCGTTAAGCGGCGGGATGAGCGGTGCATTGCCGACGGAAACGAGCTTTTAAGGTTTCACTGTTCGACGTTTTTATGCGATTTGGGGCAAAACGGTAATTCGAGTATTTGCGGGCAGCAATTTTGTAGTATTTGTGGGATAATTAAATCAGGATTTTCACACAAGTTGGACGGAATTTCGACGGTGGCGAATAGCTGGAGGGCACACGTGGCGATCCCAGAGGACATCGAAGAGGAATTCAAGTTTCTCAACGTGAAGCGGGCGATTTTGGTTTGTCGGGTCGTAGCGGGTCGGGTTGGGTCCGACGCCGATGAGCCGGAAAAAGAGGGCGGAGGGTTTGATTCCGTAGTCGGAAGGACTGGGAGCGGGGCCCAGACCACGTTGGATGAAGAAGAGCTTTTGGTTTTTAATCCAAGGGCTGTGCTCCCCTGCTTCGCCATTGTATACGAAATCTGA 1107 52.48 MAPIIPPSLPNKFLPLFLLLLHLGCFLLTTASPRPRPRPRPRPTPSCFKPRKSLSSSFSFLKRIFSSKTSTIAIDTARPPSTPARSSQHSILTLVQPEIPPPSPTIQTHPQDSDITAAETDQFFPLRNDIFPCTACGEIFPKSQLLEQHQSIKHAVSELADSDSGKNIVRIIFETGWTSREKSPKILRILKIHNSQKILSRFEEYRESVKAKAARNGGVKRRDERCIADGNELLRFHCSTFLCDLGQNGNSSICGQQFCSICGIIKSGFSHKLDGISTVANSWRAHVAIPEDIEEEFKFLNVKRAILVCRVVAGRVGSDADEPEKEGGGFDSVVGRTGSGAQTTLDEEELLVFNPRAVLPCFAIVYEI* 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12247447 12248553 - CsaV3_6G016340.1 Csa06g01436 533063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01436 368 ProSitePatterns Zinc finger C2H2 type domain signature. 133 154 IPR013087 -
Csa06g01436 368 SUPERFAMILY ADP-ribosylation 157 367 - -
Csa06g01436 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 131 159 IPR013087 -
Csa06g01436 368 Gene3D - 173 368 - -
Csa06g01436 368 MobiDBLite consensus disorder prediction 31 52 - -
Csa06g01436 368 PANTHER NUCLEIC ACID BINDING PROTEIN 10 366 - -
Csa06g01436 368 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 10 366 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00403 Csa-Chr5:2635203 Csa06g01436 Csa-Chr6:12247447 2.58E-35 dispersed
Csa05g01505 Csa-Chr5:17444431 Csa06g01436 Csa-Chr6:12247447 1.14E-64 dispersed
Csa06g01436 Csa-Chr6:12247447 Csa06g03559 Csa-Chr6:28879871 4.21E-45 dispersed
Csa06g01436 Csa-Chr6:12247447 Csa03g00581 Csa-Chr3:5040183 1.66E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32017 None None None None Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01436 - - csv:101205506 684.1