Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01479 ATGGCCACTCCATTCTCTCTCTGCATTCCCCTTCTTCTCTCATTTTCCCTCCTAATCGAAGCCAGAATCCCCGGAGTTTACTCCGGCGGCCCATGGCAGAGTGCCCACGCTACTTTCTACGGCGGCTCCGACGCTTCCGGCACAATGGGTGGAGCTTGTGGGTACGGGAATTTGTACAGCCAAGGCTACGGCGTTAACACCGCGGCGCTTAGTACTGCGCTTTTCAACAAGGGTCAGAGCTGCGGCGCTTGCTTTGAAATTAAGTGTGCTAATGATCCAAGATGGTGCCATTCTGGTAGCCCGTCGATATTGATTACTGCTACTAATTTCTGCCCGCCGAACTATGCTCTTCCGAACGATAATGGCGGCTGGTGTAATCCCCCGAGGTCTCATTTTGACCTCGCTATGCCTATGTTCCTTAAAATCGCTGAGTACCGCGCCGGAATCGTCCCCGTTTCGTACCGCCGAGTACCATGCCGTAAGCAAGGAGGAATCCGGTTCACCATCAACGGGTTTCGTTACTTCAATCTGGTTCTAATAACGAACGTGGCAGGGGCAGGGGATATCGTGAGGGTGAGTGTGAAAGGAACAAGAACCGGTTGGATGAGTTTAACAAGAAACTGGGGACAGAATTGGCAATCCAACGCAGTATTGGTGGGTCAAGCTCTTTCTTTTAGAGTGACGGGCAGCGACCGACGAACCTCAACGTCATGGAACATTGCCCCCGCTCATTGGCAGTTCGGCCAAACTTTCACCGGCAAGAACTTCCGTGTGTAA 777 52.51 MATPFSLCIPLLLSFSLLIEARIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPNDNGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGTRTGWMSLTRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIAPAHWQFGQTFTGKNFRV* 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12545225 12547156 + CsaV3_6G016770.1 Csa06g01479 533106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01479 258 Gene3D - 164 256 IPR036749 -
Csa06g01479 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Csa06g01479 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Csa06g01479 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Csa06g01479 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Csa06g01479 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Csa06g01479 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Csa06g01479 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Csa06g01479 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Csa06g01479 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Csa06g01479 258 Gene3D - 21 160 IPR036908 -
Csa06g01479 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Csa06g01479 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Csa06g01479 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Csa06g01479 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Csa06g01479 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Csa06g01479 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Csa06g01479 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Csa06g01479 258 PANTHER EXPANSIN-A15 7 257 IPR002963 GO:0009664
Csa06g01479 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Csa06g01479 258 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Csa06g01479 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Csa06g01479 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Csa06g01479 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
Csa06g01479 258 SMART dpbb_1 67 154 IPR007112 -
Csa06g01479 258 PANTHER EXPANSIN 7 257 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02423 Csa06g01479 CCT
Csa01g02423 Csa06g01479 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01856 Csa-Chr5:21845772 Csa06g01479 Csa-Chr6:12545225 3.49E-152 dispersed
Csa06g00228 Csa-Chr6:1563531 Csa06g01479 Csa-Chr6:12545225 2.13E-123 dispersed
Csa05g01432 Csa-Chr5:15429738 Csa06g01479 Csa-Chr6:12545225 9.87E-93 transposed
Csa07g00211 Csa-Chr7:1682194 Csa06g01479 Csa-Chr6:12545225 1.88E-91 transposed
Csa01g02423 Csa-Chr1:21492231 Csa06g01479 Csa-Chr6:12545225 2.11E-168 wgd
Csa04g01497 Csa-Chr4:14702397 Csa06g01479 Csa-Chr6:12545225 3.52E-173 wgd
Csa05g00717 Csa-Chr5:4890874 Csa06g01479 Csa-Chr6:12545225 1.52E-169 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01479 - - csv:101203979 527.709