Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01491 ATGGGTAACGGGATTGGGAAGCTCGGCGTTTGCTTCACCGGAATCAACGACGGTAGACGGCGCCCGGATATTTCCGTTCTCTTAACAAATCCACTTGATGAAGGTCTGGGCCACTCCTTTTGCTATGTCCGCCCGGATCCCTTGAGACTTTCGTTATCAAAAGTTCATTCTGAAGAAACCACCACTTTCCGATCAATTTCTGGCGCCTCTGTAAGTGCAAATACATCAACACCTCTTTCTACTGCTCTTATTGATCTCTATTCCTACAATAGCATTGATCGAGCGGCGGCTTTTGAGAGTTCCACTTCTTTTGCTTCAATCCCTTTACAACCGATCCCTAGAAACATGATTAATTCCGGTCCGATTTCGGGGAATTTCAGTGGAATCCCCTGCTCTGGGCCTTTGGAAAGAGGGTTTTTATCGGGTCCAATTGAACGAGGGTTTATGTCGGGTCCACTGGATCGGGGGATTTTTTCGGGTCCTCTTGATAATAATTCTACATCCAATGAATTTCAGAGGAGTTTTTCTCATGGTGCTGGGTTTAATTCCAGATCTAGATCAAGAAAAAGCCGGTTAATTCGAATTCTGAGAACCGCAATTTCAAAATCGCTTCATCGAGGACAAAATTCCATTGTGGCTCCGATTAAACCGGTTAAAGAACCCGATTGGATCGTCTTACCCGAGAAGCATAACGAGAATCTGACTGTTAGTAGTTTGAATTTCAGTAGCGAAGGTAGTTTGGATGATGATGATTCAATGGAGAGCCAAAATCTGCAGTGGGCTCAGGGAAAAGCAGGGGAAGATCGTGTTCATGTTGTTGTTTCTGAAGAACATGGGTGGGTTTTCGTTGGGATTTATGATGGATTTAACGGTCCTGATGCTCCCGATTATCTTTTGTCCAATTTATATTCCTCTGTTCATAAAGAACTCAAAGGTTTGTTATGGGATGAAAAGCTCGATTCTGCTATTGTCGCCGCTCCGGCTACTTCCCCTGTTCAGTCCGAGAATCCATTGTCAGAAACAAGAGATTTGGGGAGGAATCGAGTGAGTGATGCTTGTTCTCAGTGTGTAGAACAAGAAAATCATCCCTGTGTTAGTGGAGATGGGAATTCTGGATTGAATTCTAGGAAAAGGAAAGGTAAGAATTTAAGAGGAAAGTTTAGAGGAGCTGCTGAGAAATGGGAGGATAATCAACGGCGGTGGAAATGCGAATGGGACCGGGAAAGATTAGAACTCGACCGGAGGTTAAAGGAGCAGTTAAATCGATCAGGATCCAATGGTTCTAGGTTGATTAATCATTCGGATGTTCTCAAAGCTCTGTCCCAAGCATTGAAGAAAACAGAGGAAGCTTATTTGGATATTGCAGACAAGATGCTTGATGAAAATCCTGAACTGGCTTTGATGGGTTCTTGTGTGCTTGTAATGCTTATGAAGGGAGATGATGTTTATGTTATGAATGTTGGTGACAGCCGAGCAGTTTTAGCGCAGAAGGCGGAGCCTGATTATTGGCTTGGGAAGATTCGACAAGACTTGGAGAGGATTAATGAAGAACCAGTTCATGATATTGAAGCATTAGATGGTGATGGAGCATTCACTTCCGCTAACCTTACTGCTTTTCAGCTTTCCATGGATCATAGTACCAGTGTTGATGAGGAAGTTCAGAGAATAAAAAATGAACACCCTGATGATGCTGGTGCCGTGATGAACGATCGTGTCAAAGGGTCGTTGAAGGTTACTCGAGCATTCGGGGCTGGGTTCCTCAAACAGCCTAAATGGAACAATGCATTGTTGGAAATGTTCAGAATCGACTACGTTGGGAGATCGCCATACATCAATTGTTTACCATCTCTCTACCACCATAGATTGGGACCAAAAGACAGGTTTTTGATACTATCATCAGATGGACTCTACCAGTACTTCACAAACGAAGAAGCTGTTTCCGAAGTCGAACTTTTCATCGCATTGCAACCCGAAGGAGACCCGGCTCAACATCTGGTTGAATTACTGCTGTTTCGGGCTGCAAAAAGAGCTGGTATGGATTTCCATGAGTTACTCGAAATACCACAGGGTGATCGGAGGAAGTATCACGATGATGTATCGATCATTGTAATTTCATTAGAAGGAAGGATATGGAGATCTTGTGTATAA 2148 43.62 MGNGIGKLGVCFTGINDGRRRPDISVLLTNPLDEGLGHSFCYVRPDPLRLSLSKVHSEETTTFRSISGASVSANTSTPLSTALIDLYSYNSIDRAAAFESSTSFASIPLQPIPRNMINSGPISGNFSGIPCSGPLERGFLSGPIERGFMSGPLDRGIFSGPLDNNSTSNEFQRSFSHGAGFNSRSRSRKSRLIRILRTAISKSLHRGQNSIVAPIKPVKEPDWIVLPEKHNENLTVSSLNFSSEGSLDDDDSMESQNLQWAQGKAGEDRVHVVVSEEHGWVFVGIYDGFNGPDAPDYLLSNLYSSVHKELKGLLWDEKLDSAIVAAPATSPVQSENPLSETRDLGRNRVSDACSQCVEQENHPCVSGDGNSGLNSRKRKGKNLRGKFRGAAEKWEDNQRRWKCEWDRERLELDRRLKEQLNRSGSNGSRLINHSDVLKALSQALKKTEEAYLDIADKMLDENPELALMGSCVLVMLMKGDDVYVMNVGDSRAVLAQKAEPDYWLGKIRQDLERINEEPVHDIEALDGDGAFTSANLTAFQLSMDHSTSVDEEVQRIKNEHPDDAGAVMNDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFRIDYVGRSPYINCLPSLYHHRLGPKDRFLILSSDGLYQYFTNEEAVSEVELFIALQPEGDPAQHLVELLLFRAAKRAGMDFHELLEIPQGDRRKYHDDVSIIVISLEGRIWRSCV* 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12600999 12604377 + CsaV3_6G016880.1 Csa06g01491 533118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01491 715 Coils Coil 437 457 - -
Csa06g01491 715 CDD PP2Cc 432 706 IPR001932 -
Csa06g01491 715 Pfam Protein phosphatase 2C 439 655 IPR001932 -
Csa06g01491 715 PANTHER PROTEIN PHOSPHATASE 2C 12 715 IPR015655 GO:0004722|GO:0006470
Csa06g01491 715 PANTHER - 12 715 - -
Csa06g01491 715 SUPERFAMILY PP2C-like 264 707 IPR036457 -
Csa06g01491 715 Gene3D - 228 710 IPR036457 -
Csa06g01491 715 ProSiteProfiles PPM-type phosphatase domain profile. 250 706 IPR001932 -
Csa06g01491 715 SMART PP2C_4 251 704 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01460 Csa-Chr3:10886692 Csa06g01491 Csa-Chr6:12600999 6.46E-13 dispersed
Csa06g01491 Csa-Chr6:12600999 Csa06g03363 Csa-Chr6:28014814 5.98E-39 dispersed
Csa03g00189 Csa-Chr3:1405926 Csa06g01491 Csa-Chr6:12600999 1.34E-46 transposed
Csa04g01492 Csa-Chr4:14662814 Csa06g01491 Csa-Chr6:12600999 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01491 - - csv:101222644 1412.51