Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01498 ATGGAGGGAGGTAACAATGGCGGCTCCTTTCGGAGTTTGATCGACTTGGTGAACGATGTTGCTTCAATCTCTGACTTCAGGTATGCGGTCAGAAAGCAGTATTGTAATTTAGCTAGGCGGCTGAAGCTGTTGATCCCAATGTTTGAAGAGATGAGGGATATGAAGCAACCGCTGCCGGATGATATCGTTCAAGCTCTTGCTTCGTTGAAAGAAGCTCTGGAATCGACTAAGGAGTTGCTTAGACATGGGAGCGAGGGGAGCAAGATTTATCTGGGCTTGGAGAGAGAGCAAATTTTGAATCAATTTCACAAGGTGACAGCAAGACTGGAGCAAGCTCTGAATGAAATTTCACATGAAGCTCTTGACATATCTGATGAAGTCAAGGAGCAGGTTGACCTTGTTCTCTCTCAATTCAAAAGGGCAAGAGAAAGGAAGGATACAGAAGATGCTGAGCTGTATGTTAACCTGAACTCTCTCTATAACAACAGAGATGTTGCTACTGATCCTTCTATCTTGAAAGGATTGGCTGAGAAGTTGCAATTGATGGATATAGCTGATCTTACTCAAGAATCTCTTGCTTTACATGAAATGGTTTCGGCTAGTGATGGAGATCCAGGAGGGAGATTTGAGAAAATGTCGATACTATTGAAGAGAATAAAAGATTTTATGCTAACTGAAAACCCTGAATTTGGTTCTTCAAAAGAACAGAGTCATCCTCGCACTGGTGGACAAACGTCTGCTGGTAAGAAAAATATATCGTCCCTTCACATACCTGAGGACTTTCGATGCCCCATATCCCTGGATTTGATGAAAGATCCCGTCATTGTCTCTACAGGACAGACCTATGAACGTGGTTTCATTGAGAAGTGGCTGGCAGATGGACACATGACATGCCCAAAAACTCAACAAGTTCTCACTAGCAAAATTCTTACACCAAATTATGTTTTACGTAGTCTCATAGCTCAATGGTGCGAGGCCAATGGGATCAAACCACCACAACGTGCCAGCAGTTCTCAGCCGAGTGAGTTGACTCCGGCTGAACGCTCTAAGTATGAAGCTCTACTCCACAAGCTCACATCAGGTAACATTGAAGACAAGCGATCTGCTGCTGGTGAGATTCGGCTTCTAGCCAAACGCAATGCAAATAATCGTGTAGCCATTGCTGAAGCTGGTGCAATTCCTCTTCTTGTTGATCTCCTTTCAACAACAGACCCCCTCACTCAAGAGCATGCTGTGACAGCATTACTTAACCTATCAATTTGTGACAATAACAAGAGAAGCATCATGTCCTGTAGGGCTGCGCCTGGCATAGTCCATGTGCTGAAGTGGGGGAGTATGGAAGCACGTGAAAATGCTGCTGCCACTCTTTTCAGTCTCTCTGTTGTAGATGAATATAAAGTAATGATCGGCGCATCGGGAGCCATTCTGCCACTTATTGCACTACTTAATGAAGGTACTCAAAGGGGGAAGAAGGATGCTGCAACGGCTCTATTCAACTTGTGTTTCTTCCAAGGTAACAAGATAAAGGCAGTCAGGGGTGGTGTTGTTTCCATACTAATGCAGCTGTTGACAGAATCTAGAATAGGGATGGTAGATGAGGCCCTTGCAATATTAGCCATACTGGCCAACAATTCCGAAGGACGAGCCGCTATTGGAGCAGCCGAATCTGTCCCCATTTTAGTAAATCTCATTGGAACAGGATCCCCTAGGAATAGGGAAAATGCAGCTGCAGTTTTGGTGCATCTTTGCATGGGAGACAAACGACATCTTGTTGAAGCAAAGGAGCTTGGAGTGATTGGTTTGCTTGTGGATATGGCAGAAAATGGAACAGACCGAGGTAAGCGCAAAGCAACACAATTGCTTGACCAAATAAACAGGTTTACAGAGCTGCAGAAAGAGGGTGAGGTTCAATCTCAGTCTCAATCCCAGCCGTTACTACCACCACCTTCCGCAATCGGCAACGTTGAAAGCTGA 1974 44.83 MEGGNNGGSFRSLIDLVNDVASISDFRYAVRKQYCNLARRLKLLIPMFEEMRDMKQPLPDDIVQALASLKEALESTKELLRHGSEGSKIYLGLEREQILNQFHKVTARLEQALNEISHEALDISDEVKEQVDLVLSQFKRARERKDTEDAELYVNLNSLYNNRDVATDPSILKGLAEKLQLMDIADLTQESLALHEMVSASDGDPGGRFEKMSILLKRIKDFMLTENPEFGSSKEQSHPRTGGQTSAGKKNISSLHIPEDFRCPISLDLMKDPVIVSTGQTYERGFIEKWLADGHMTCPKTQQVLTSKILTPNYVLRSLIAQWCEANGIKPPQRASSSQPSELTPAERSKYEALLHKLTSGNIEDKRSAAGEIRLLAKRNANNRVAIAEAGAIPLLVDLLSTTDPLTQEHAVTALLNLSICDNNKRSIMSCRAAPGIVHVLKWGSMEARENAAATLFSLSVVDEYKVMIGASGAILPLIALLNEGTQRGKKDAATALFNLCFFQGNKIKAVRGGVVSILMQLLTESRIGMVDEALAILAILANNSEGRAAIGAAESVPILVNLIGTGSPRNRENAAAVLVHLCMGDKRHLVEAKELGVIGLLVDMAENGTDRGKRKATQLLDQINRFTELQKEGEVQSQSQSQPLLPPPSAIGNVES* 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12659968 12664559 + CsaV3_6G016960.1 Csa06g01498 533125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01498 657 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 330 IPR013083 -
Csa06g01498 657 SUPERFAMILY RING/U-box 252 332 - -
Csa06g01498 657 MobiDBLite consensus disorder prediction 632 648 - -
Csa06g01498 657 SMART Ubox_2 260 323 IPR003613 GO:0004842|GO:0016567
Csa06g01498 657 Gene3D - 490 634 IPR011989 -
Csa06g01498 657 Pfam U-box domain 257 327 IPR003613 GO:0004842|GO:0016567
Csa06g01498 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 391 429 IPR000225 GO:0005515
Csa06g01498 657 Pfam Armadillo/beta-catenin-like repeat 381 419 IPR000225 GO:0005515
Csa06g01498 657 Pfam Armadillo/beta-catenin-like repeat 544 583 IPR000225 GO:0005515
Csa06g01498 657 Pfam Armadillo/beta-catenin-like repeat 464 501 IPR000225 GO:0005515
Csa06g01498 657 ProSiteProfiles U-box domain profile. 256 330 IPR003613 GO:0004842|GO:0016567
Csa06g01498 657 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 638 - -
Csa06g01498 657 Coils Coil 95 115 - -
Csa06g01498 657 SUPERFAMILY ARM repeat 352 624 IPR016024 -
Csa06g01498 657 MobiDBLite consensus disorder prediction 632 657 - -
Csa06g01498 657 MobiDBLite consensus disorder prediction 229 251 - -
Csa06g01498 657 PANTHER U BOX DOMAIN-CONTAINING 11 638 - -
Csa06g01498 657 SMART arm_5 544 584 IPR000225 GO:0005515
Csa06g01498 657 SMART arm_5 462 502 IPR000225 GO:0005515
Csa06g01498 657 SMART arm_5 421 461 IPR000225 GO:0005515
Csa06g01498 657 SMART arm_5 380 420 IPR000225 GO:0005515
Csa06g01498 657 SMART arm_5 503 543 IPR000225 GO:0005515
Csa06g01498 657 Gene3D - 336 488 IPR011989 -
Csa06g01498 657 Gene3D - 9 120 IPR036537 GO:0007166
Csa06g01498 657 CDD RING-Ubox_PUB 261 303 IPR045210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01498 - - - csv:101221150 1252.27
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa01g02400 Csa06g01498 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02787 Csa-Chr5:28504015 Csa06g01498 Csa-Chr6:12659968 0 dispersed
Csa06g00194 Csa-Chr6:1333768 Csa06g01498 Csa-Chr6:12659968 2.45E-112 dispersed
Csa06g01017 Csa-Chr6:8283110 Csa06g01498 Csa-Chr6:12659968 2.58E-157 dispersed
Csa02g00797 Csa-Chr2:6887905 Csa06g01498 Csa-Chr6:12659968 1.30E-66 transposed
Csa06g02200 Csa-Chr6:19847220 Csa06g01498 Csa-Chr6:12659968 6.79E-32 transposed
Csa07g00960 Csa-Chr7:8466266 Csa06g01498 Csa-Chr6:12659968 9.31E-09 transposed
Csa03g02707 Csa-Chr3:25874739 Csa06g01498 Csa-Chr6:12659968 6.76E-87 transposed
Csa01g02400 Csa-Chr1:21307088 Csa06g01498 Csa-Chr6:12659968 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g428 . Blo03g01237 Bda02g00818 . . Bpe08g01367 Bma14g00501 . Cmo13g00131 . Cma01g00596 Cma13g00132 Car01g00541 Car13g00102 . . Cpe20g00814 Bhi08g00620 . . . . . . Cla02g01975 Cam02g2095 Cec02g2133 Cco02g2163 Clacu02g2083 Cmu02g2020 Cre02g2329 . . Cone18ag0344 Cone11ag1246 Lsi02g01363 Csa06g01498 Chy11g01242 Cme11g01284 . Blo14g00121 Bda07g00590 . . Bpe11g00764 . Bma11g00122 Sed05g2955 . . . Cma20g00410 . Car20g00358 . . Bhi10g00688 Tan05g0378 Cmetu11g2533 . . . . Cla03g00152 Cam03g0158 Cec03g0157 Cco03g0164 Clacu03g0161 Cmu03g0778 Cre03g0473 . Csa01g02400 Chy12g00185 Cme12g00199
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g03801 . 1 1044 U-box Gene Family AT5G15400 75.9 0.0e+00 1568.9
Csa02g01443 . 196 842 U-box Gene Family AT2G23140 66.2 9.2e-122 434.5
Csa02g01820 . 1 776 U-box Gene Family AT1G24330 59.3 1.8e-244 842.4
Csa05g02223 . 1 758 U-box Gene Family AT1G24330 58.2 1.6e-229 792.7
Csa02g01820 . 1 775 U-box Gene Family AT1G67530 59.1 1.2e-240 829.7
Csa05g02223 . 1 758 U-box Gene Family AT1G67530 57.0 1.7e-223 772.7
Csa06g03568 . 1 362 U-box Gene Family AT4G21350 62.1 2.3e-120 429.1
Csa03g02707 . 135 462 U-box Gene Family AT3G07360 54.4 1.1e-78 290.4
Csa05g01046 . 269 456 U-box Gene Family AT1G71020 71.4 9.2e-74 274.6
Csa05g02038 . 246 457 U-box Gene Family AT1G71020 54.5 8.1e-54 208.4
Csa01g02400 CCT 259 428 U-box Gene Family AT1G71020 57.8 3.9e-48 189.5
Csa05g02787 . 246 413 U-box Gene Family AT1G71020 58.5 5.1e-48 189.1
Csa06g01498 CCT 254 423 U-box Gene Family AT1G71020 55.4 1.4e-45 181.0
Csa05g01046 . 16 660 U-box Gene Family AT1G23030 56.7 1.0e-109 394.4
Csa01g02400 CCT 94 632 U-box Gene Family AT2G28830 53.4 9.6e-102 367.9
Csa06g01498 CCT 93 633 U-box Gene Family AT2G28830 50.9 1.2e-99 360.9
Csa01g02400 CCT 1 642 U-box Gene Family AT3G46510 72.4 3.2e-178 622.1
Csa06g01498 CCT 11 647 U-box Gene Family AT3G46510 65.8 4.8e-158 555.1
Csa05g02787 . 5 620 U-box Gene Family AT3G46510 58.5 1.3e-123 440.7
Csa05g02787 . 9 619 U-box Gene Family AT3G54850 69.6 1.7e-168 589.7
Csa01g02400 CCT 9 631 U-box Gene Family AT3G54850 59.5 1.4e-122 437.2
Csa06g01498 CCT 13 626 U-box Gene Family AT3G54850 57.5 1.3e-115 414.1
Csa06g01017 . 169 721 U-box Gene Family AT5G42340 66.0 4.6e-124 442.2
Csa04g01681 . 9 671 U-box Gene Family AT5G01830 57.7 5.0e-195 677.9
Csa01g02298 . 1 714 U-box Gene Family AT1G29340 67.2 2.0e-245 845.5
Csa03g02112 . 27 443 U-box Gene Family AT5G37490 52.0 3.5e-112 402.1
Csa04g01150 . 4 423 U-box Gene Family AT3G52450 50.6 1.4e-113 406.8
Csa03g03495 . 1 404 U-box Gene Family AT2G35930 55.4 6.6e-121 431.0
Csa06g02471 . 12 412 U-box Gene Family AT2G35930 52.0 4.9e-116 414.8
Csa03g01844 . 9 424 U-box Gene Family AT3G19380 64.2 2.1e-146 515.8
Csa03g01844 . 1 424 U-box Gene Family AT1G49780 64.3 6.2e-151 530.8
Csa06g02795 . 1 403 U-box Gene Family AT5G64660 55.7 5.1e-121 431.4
Csa06g02795 . 1 403 U-box Gene Family AT5G09800 50.9 5.0e-105 378.3
Csa04g02494 CCT 1 454 U-box Gene Family AT3G49810 63.5 6.8e-156 547.4
Csa02g01879 CCT 24 479 U-box Gene Family AT3G49810 62.3 1.0e-151 533.5
Csa02g01879 CCT 24 479 U-box Gene Family AT5G65920 62.5 2.5e-150 528.9
Csa04g02494 CCT 1 454 U-box Gene Family AT5G65920 62.4 1.2e-149 526.6
Csa03g00887 CCT 1 874 U-box Gene Family AT2G45910 51.1 1.1e-228 790.0
Csa02g00037 . 11 733 U-box Gene Family AT2G19410 50.7 4.6e-208 721.5
Csa05g00483 . 24 807 U-box Gene Family AT4G25160 52.6 4.4e-225 778.1
Csa05g02927 . 39 555 U-box Gene Family AT5G40140 55.6 5.9e-93 338.6
Csa01g00180 . 27 537 U-box Gene Family AT5G40140 51.9 6.0e-69 258.8
Csa01g00824 . 29 498 U-box Gene Family AT5G40140 50.6 1.9e-54 210.7
Csa06g01954 . 4 815 U-box Gene Family AT1G76390 60.4 1.9e-265 912.1
Csa06g01954 . 13 815 U-box Gene Family AT1G20780 61.0 5.0e-274 940.6
Csa02g01820 . 1 779 U-box Gene Family AT1G27910 62.4 2.7e-269 924.9
Csa05g02223 . 1 768 U-box Gene Family AT1G27910 63.3 1.5e-264 909.1
Csa06g03023 . 1 593 U-box Gene Family AT5G67530 74.6 4.0e-260 894.0
Csa03g03444 . 12 162 U-box Gene Family AT5G67530 50.3 8.8e-42 168.7
Csa05g00483 . 25 807 U-box Gene Family AT5G61550 50.7 7.7e-225 777.3
Csa03g01174 . 4 489 U-box Gene Family AT1G04510 73.9 9.3e-205 709.9
Csa03g01174 . 4 458 U-box Gene Family AT2G33340 72.6 6.4e-192 667.2
Csa03g02706 . 14 280 U-box Gene Family AT3G07370 66.7 3.9e-101 364.8
Csa03g03801 . 1 1044 U-box Gene Family AT5G15400 75.9 0.0e+00 1568.9
Csa02g01443 . 196 842 U-box Gene Family AT2G23140 66.2 9.2e-122 434.5
Csa02g01820 . 1 776 U-box Gene Family AT1G24330 59.3 1.8e-244 842.4
Csa05g02223 . 1 758 U-box Gene Family AT1G24330 58.2 1.6e-229 792.7
Csa02g01820 . 1 775 U-box Gene Family AT1G67530 59.1 1.2e-240 829.7
Csa05g02223 . 1 758 U-box Gene Family AT1G67530 57.0 1.7e-223 772.7
Csa06g03568 . 1 362 U-box Gene Family AT4G21350 62.1 2.3e-120 429.1
Csa03g02707 . 135 462 U-box Gene Family AT3G07360 54.4 1.1e-78 290.4
Csa05g01046 . 269 456 U-box Gene Family AT1G71020 71.4 9.2e-74 274.6
Csa05g02038 . 246 457 U-box Gene Family AT1G71020 54.5 8.1e-54 208.4
Csa01g02400 CCT 259 428 U-box Gene Family AT1G71020 57.8 3.9e-48 189.5
Csa05g02787 . 246 413 U-box Gene Family AT1G71020 58.5 5.1e-48 189.1
Csa06g01498 CCT 254 423 U-box Gene Family AT1G71020 55.4 1.4e-45 181.0
Csa05g01046 . 16 660 U-box Gene Family AT1G23030 56.7 1.0e-109 394.4
Csa01g02400 CCT 94 632 U-box Gene Family AT2G28830 53.4 9.6e-102 367.9
Csa06g01498 CCT 93 633 U-box Gene Family AT2G28830 50.9 1.2e-99 360.9
Csa01g02400 CCT 1 642 U-box Gene Family AT3G46510 72.4 3.2e-178 622.1
Csa06g01498 CCT 11 647 U-box Gene Family AT3G46510 65.8 4.8e-158 555.1
Csa05g02787 . 5 620 U-box Gene Family AT3G46510 58.5 1.3e-123 440.7
Csa05g02787 . 9 619 U-box Gene Family AT3G54850 69.6 1.7e-168 589.7
Csa01g02400 CCT 9 631 U-box Gene Family AT3G54850 59.5 1.4e-122 437.2
Csa06g01498 CCT 13 626 U-box Gene Family AT3G54850 57.5 1.3e-115 414.1
Csa06g01017 . 169 721 U-box Gene Family AT5G42340 66.0 4.6e-124 442.2
Csa04g01681 . 9 671 U-box Gene Family AT5G01830 57.7 5.0e-195 677.9
Csa01g02298 . 1 714 U-box Gene Family AT1G29340 67.2 2.0e-245 845.5
Csa03g02112 . 27 443 U-box Gene Family AT5G37490 52.0 3.5e-112 402.1
Csa04g01150 . 4 423 U-box Gene Family AT3G52450 50.6 1.4e-113 406.8
Csa03g03495 . 1 404 U-box Gene Family AT2G35930 55.4 6.6e-121 431.0
Csa06g02471 . 12 412 U-box Gene Family AT2G35930 52.0 4.9e-116 414.8
Csa03g01844 . 9 424 U-box Gene Family AT3G19380 64.2 2.1e-146 515.8
Csa03g01844 . 1 424 U-box Gene Family AT1G49780 64.3 6.2e-151 530.8
Csa06g02795 . 1 403 U-box Gene Family AT5G64660 55.7 5.1e-121 431.4
Csa06g02795 . 1 403 U-box Gene Family AT5G09800 50.9 5.0e-105 378.3
Csa04g02494 CCT 1 454 U-box Gene Family AT3G49810 63.5 6.8e-156 547.4
Csa02g01879 CCT 24 479 U-box Gene Family AT3G49810 62.3 1.0e-151 533.5
Csa02g01879 CCT 24 479 U-box Gene Family AT5G65920 62.5 2.5e-150 528.9
Csa04g02494 CCT 1 454 U-box Gene Family AT5G65920 62.4 1.2e-149 526.6
Csa03g00887 CCT 1 874 U-box Gene Family AT2G45910 51.1 1.1e-228 790.0
Csa02g00037 . 11 733 U-box Gene Family AT2G19410 50.7 4.6e-208 721.5
Csa05g00483 . 24 807 U-box Gene Family AT4G25160 52.6 4.4e-225 778.1
Csa05g02927 . 39 555 U-box Gene Family AT5G40140 55.6 5.9e-93 338.6
Csa01g00180 . 27 537 U-box Gene Family AT5G40140 51.9 6.0e-69 258.8
Csa01g00824 . 29 498 U-box Gene Family AT5G40140 50.6 1.9e-54 210.7
Csa06g01954 . 4 815 U-box Gene Family AT1G76390 60.4 1.9e-265 912.1
Csa06g01954 . 13 815 U-box Gene Family AT1G20780 61.0 5.0e-274 940.6
Csa02g01820 . 1 779 U-box Gene Family AT1G27910 62.4 2.7e-269 924.9
Csa05g02223 . 1 768 U-box Gene Family AT1G27910 63.3 1.5e-264 909.1
Csa06g03023 . 1 593 U-box Gene Family AT5G67530 74.6 4.0e-260 894.0
Csa03g03444 . 12 162 U-box Gene Family AT5G67530 50.3 8.8e-42 168.7
Csa05g00483 . 25 807 U-box Gene Family AT5G61550 50.7 7.7e-225 777.3
Csa03g01174 . 4 489 U-box Gene Family AT1G04510 73.9 9.3e-205 709.9
Csa03g01174 . 4 458 U-box Gene Family AT2G33340 72.6 6.4e-192 667.2
Csa03g02706 . 14 280 U-box Gene Family AT3G07370 66.7 3.9e-101 364.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013844 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 2 0 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g01498 Csa_Chr06 FPKM 81.040161 94.805641 94.726707 104.564842 62.853043 65.39106 60.8755 131.373581 126.7938 132.73587
Csa06g01498 Csa_Chr00 FPKM 23.092703 24.749153 25.688581 27.069422 16.15542 15.427312 15.968681 33.531933 31.868954 35.114491