Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01498 ATGGAGGGAGGTAACAATGGCGGCTCCTTTCGGAGTTTGATCGACTTGGTGAACGATGTTGCTTCAATCTCTGACTTCAGGTATGCGGTCAGAAAGCAGTATTGTAATTTAGCTAGGCGGCTGAAGCTGTTGATCCCAATGTTTGAAGAGATGAGGGATATGAAGCAACCGCTGCCGGATGATATCGTTCAAGCTCTTGCTTCGTTGAAAGAAGCTCTGGAATCGACTAAGGAGTTGCTTAGACATGGGAGCGAGGGGAGCAAGATTTATCTGGGCTTGGAGAGAGAGCAAATTTTGAATCAATTTCACAAGGTGACAGCAAGACTGGAGCAAGCTCTGAATGAAATTTCACATGAAGCTCTTGACATATCTGATGAAGTCAAGGAGCAGGTTGACCTTGTTCTCTCTCAATTCAAAAGGGCAAGAGAAAGGAAGGATACAGAAGATGCTGAGCTGTATGTTAACCTGAACTCTCTCTATAACAACAGAGATGTTGCTACTGATCCTTCTATCTTGAAAGGATTGGCTGAGAAGTTGCAATTGATGGATATAGCTGATCTTACTCAAGAATCTCTTGCTTTACATGAAATGGTTTCGGCTAGTGATGGAGATCCAGGAGGGAGATTTGAGAAAATGTCGATACTATTGAAGAGAATAAAAGATTTTATGCTAACTGAAAACCCTGAATTTGGTTCTTCAAAAGAACAGAGTCATCCTCGCACTGGTGGACAAACGTCTGCTGGTAAGAAAAATATATCGTCCCTTCACATACCTGAGGACTTTCGATGCCCCATATCCCTGGATTTGATGAAAGATCCCGTCATTGTCTCTACAGGACAGACCTATGAACGTGGTTTCATTGAGAAGTGGCTGGCAGATGGACACATGACATGCCCAAAAACTCAACAAGTTCTCACTAGCAAAATTCTTACACCAAATTATGTTTTACGTAGTCTCATAGCTCAATGGTGCGAGGCCAATGGGATCAAACCACCACAACGTGCCAGCAGTTCTCAGCCGAGTGAGTTGACTCCGGCTGAACGCTCTAAGTATGAAGCTCTACTCCACAAGCTCACATCAGGTAACATTGAAGACAAGCGATCTGCTGCTGGTGAGATTCGGCTTCTAGCCAAACGCAATGCAAATAATCGTGTAGCCATTGCTGAAGCTGGTGCAATTCCTCTTCTTGTTGATCTCCTTTCAACAACAGACCCCCTCACTCAAGAGCATGCTGTGACAGCATTACTTAACCTATCAATTTGTGACAATAACAAGAGAAGCATCATGTCCTGTAGGGCTGCGCCTGGCATAGTCCATGTGCTGAAGTGGGGGAGTATGGAAGCACGTGAAAATGCTGCTGCCACTCTTTTCAGTCTCTCTGTTGTAGATGAATATAAAGTAATGATCGGCGCATCGGGAGCCATTCTGCCACTTATTGCACTACTTAATGAAGGTACTCAAAGGGGGAAGAAGGATGCTGCAACGGCTCTATTCAACTTGTGTTTCTTCCAAGGTAACAAGATAAAGGCAGTCAGGGGTGGTGTTGTTTCCATACTAATGCAGCTGTTGACAGAATCTAGAATAGGGATGGTAGATGAGGCCCTTGCAATATTAGCCATACTGGCCAACAATTCCGAAGGACGAGCCGCTATTGGAGCAGCCGAATCTGTCCCCATTTTAGTAAATCTCATTGGAACAGGATCCCCTAGGAATAGGGAAAATGCAGCTGCAGTTTTGGTGCATCTTTGCATGGGAGACAAACGACATCTTGTTGAAGCAAAGGAGCTTGGAGTGATTGGTTTGCTTGTGGATATGGCAGAAAATGGAACAGACCGAGGTAAGCGCAAAGCAACACAATTGCTTGACCAAATAAACAGGTTTACAGAGCTGCAGAAAGAGGGTGAGGTTCAATCTCAGTCTCAATCCCAGCCGTTACTACCACCACCTTCCGCAATCGGCAACGTTGAAAGCTGA 1974 44.83 MEGGNNGGSFRSLIDLVNDVASISDFRYAVRKQYCNLARRLKLLIPMFEEMRDMKQPLPDDIVQALASLKEALESTKELLRHGSEGSKIYLGLEREQILNQFHKVTARLEQALNEISHEALDISDEVKEQVDLVLSQFKRARERKDTEDAELYVNLNSLYNNRDVATDPSILKGLAEKLQLMDIADLTQESLALHEMVSASDGDPGGRFEKMSILLKRIKDFMLTENPEFGSSKEQSHPRTGGQTSAGKKNISSLHIPEDFRCPISLDLMKDPVIVSTGQTYERGFIEKWLADGHMTCPKTQQVLTSKILTPNYVLRSLIAQWCEANGIKPPQRASSSQPSELTPAERSKYEALLHKLTSGNIEDKRSAAGEIRLLAKRNANNRVAIAEAGAIPLLVDLLSTTDPLTQEHAVTALLNLSICDNNKRSIMSCRAAPGIVHVLKWGSMEARENAAATLFSLSVVDEYKVMIGASGAILPLIALLNEGTQRGKKDAATALFNLCFFQGNKIKAVRGGVVSILMQLLTESRIGMVDEALAILAILANNSEGRAAIGAAESVPILVNLIGTGSPRNRENAAAVLVHLCMGDKRHLVEAKELGVIGLLVDMAENGTDRGKRKATQLLDQINRFTELQKEGEVQSQSQSQPLLPPPSAIGNVES* 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12659968 12664559 + CsaV3_6G016960.1 Csa06g01498 533125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01498 657 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 330 IPR013083 -
Csa06g01498 657 SUPERFAMILY RING/U-box 252 332 - -
Csa06g01498 657 MobiDBLite consensus disorder prediction 632 648 - -
Csa06g01498 657 SMART Ubox_2 260 323 IPR003613 GO:0004842|GO:0016567
Csa06g01498 657 Gene3D - 490 634 IPR011989 -
Csa06g01498 657 Pfam U-box domain 257 327 IPR003613 GO:0004842|GO:0016567
Csa06g01498 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 391 429 IPR000225 GO:0005515
Csa06g01498 657 Pfam Armadillo/beta-catenin-like repeat 381 419 IPR000225 GO:0005515
Csa06g01498 657 Pfam Armadillo/beta-catenin-like repeat 544 583 IPR000225 GO:0005515
Csa06g01498 657 Pfam Armadillo/beta-catenin-like repeat 464 501 IPR000225 GO:0005515
Csa06g01498 657 ProSiteProfiles U-box domain profile. 256 330 IPR003613 GO:0004842|GO:0016567
Csa06g01498 657 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 638 - -
Csa06g01498 657 Coils Coil 95 115 - -
Csa06g01498 657 SUPERFAMILY ARM repeat 352 624 IPR016024 -
Csa06g01498 657 MobiDBLite consensus disorder prediction 632 657 - -
Csa06g01498 657 MobiDBLite consensus disorder prediction 229 251 - -
Csa06g01498 657 PANTHER U BOX DOMAIN-CONTAINING 11 638 - -
Csa06g01498 657 SMART arm_5 544 584 IPR000225 GO:0005515
Csa06g01498 657 SMART arm_5 462 502 IPR000225 GO:0005515
Csa06g01498 657 SMART arm_5 421 461 IPR000225 GO:0005515
Csa06g01498 657 SMART arm_5 380 420 IPR000225 GO:0005515
Csa06g01498 657 SMART arm_5 503 543 IPR000225 GO:0005515
Csa06g01498 657 Gene3D - 336 488 IPR011989 -
Csa06g01498 657 Gene3D - 9 120 IPR036537 GO:0007166
Csa06g01498 657 CDD RING-Ubox_PUB 261 303 IPR045210 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02400 Csa06g01498 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02787 Csa-Chr5:28504015 Csa06g01498 Csa-Chr6:12659968 0 dispersed
Csa06g00194 Csa-Chr6:1333768 Csa06g01498 Csa-Chr6:12659968 2.45E-112 dispersed
Csa06g01017 Csa-Chr6:8283110 Csa06g01498 Csa-Chr6:12659968 2.58E-157 dispersed
Csa02g00797 Csa-Chr2:6887905 Csa06g01498 Csa-Chr6:12659968 1.30E-66 transposed
Csa06g02200 Csa-Chr6:19847220 Csa06g01498 Csa-Chr6:12659968 6.79E-32 transposed
Csa07g00960 Csa-Chr7:8466266 Csa06g01498 Csa-Chr6:12659968 9.31E-09 transposed
Csa03g02707 Csa-Chr3:25874739 Csa06g01498 Csa-Chr6:12659968 6.76E-87 transposed
Csa01g02400 Csa-Chr1:21307088 Csa06g01498 Csa-Chr6:12659968 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01498 - - csv:101221150 1252.27