Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Csa06g01499	ATGGCTCACTCTTCTCTTCCAATCTTTTTAGATCCTCCAAATTGGCATCAATCGAATCAGACATCCGCAACAACAACAAATGATGATCATCAAGATCCACGTCAAGTTTCGGCAGCATTTTTACCACCACCGCCGCCTACGACGGGTCATGGAGGAGGTGGAATCCGACCAAATTCTATGGCGTATAGAGCGCGGCTAGCGATGATACCGCAGTCGGAGGCAACATTAAAATGTCCTCGTTGTGATTCAACAAATACAAAATTCTGTTATTTCAATAACTACAGCCTTTCACAGCCGCGCCATTTCTGTAAAGCCTGTCGCCGGTACTGGACCCGCGGCGGCGCTCTTAGAAACGTCCCCGTCGGTGGTGGCTTTCGTAAGAACAAGAAGAAGAAGAAATCTAATAACCGATCTAAATCCCCCACTCCCTCTCAATCTCAATTGGGTAATTCAAGAACAATAATGTCAAGAAATTGCAACAACATTGAGAGTAGTAATACAACGAGAGATTTTTCATCACATCCTTCGTTACAATTATCTTCGATGAACATTATTCCATCTCTTCAACAACAATTTTCTCGTAATTTTGGAGACAGCTTTGTTGGAATTCATATCAATAGTTCCTCTGCCACCACCGCCAGGGAATTCGATCAATGGCACTGTTTTCAACAACAACAACAACCATTCCTCGTCGCGGGACTAGAATCTCCGACCACCACCACAACCGCACCTGAATATCCAGAAATTGGTGTCAACAACAACAACAACTTTGGTGCTAACTCATTACAACAAGCCAGTGGTTTAGTACAATACAACAACAGTAATAATTGTCATCAACAACAACTGCAGAATCTGACACAGTTTTCTAGAATTCCTTTGAAAAATGAAGAACAAAACCGAGAACAAGGAACAATGCTATCAAATTTCTTACGACCAAATGATCAAAACAACAGCCAGTTTTGGGGAAGTGAGCATCAAAATTCATGGACAGATCATTTGTCAGCTCTAAGTTCTTCTTCAAGCAGCCATCTTTTGTAA	1038	42.0	MAHSSLPIFLDPPNWHQSNQTSATTTNDDHQDPRQVSAAFLPPPPPTTGHGGGGIRPNSMAYRARLAMIPQSEATLKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGFRKNKKKKKSNNRSKSPTPSQSQLGNSRTIMSRNCNNIESSNTTRDFSSHPSLQLSSMNIIPSLQQQFSRNFGDSFVGIHINSSSATTAREFDQWHCFQQQQQPFLVAGLESPTTTTTAPEYPEIGVNNNNNFGANSLQQASGLVQYNNSNNCHQQQLQNLTQFSRIPLKNEEQNREQGTMLSNFLRPNDQNNSQFWGSEHQNSWTDHLSALSSSSSSHLL*	346

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
6	12669120	12671483	-	CsaV3_6G016970.1	Csa06g01499	533126

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Csa06g01499	345	MobiDBLite	consensus disorder prediction	138	155	-	-
	Csa06g01499	345	ProSitePatterns	Zinc finger Dof-type signature.	78	114	IPR003851	GO:0003677\|GO:0006355
	Csa06g01499	345	PANTHER	DOF ZINC FINGER PROTEIN DOF1.4-RELATED	15	329	IPR045174	GO:0003700\|GO:0006355
	Csa06g01499	345	PANTHER	DOF DOMAIN ZINC FINGER PROTEIN	15	329	-	-
	Csa06g01499	345	ProSiteProfiles	Zinc finger Dof-type profile.	76	130	IPR003851	GO:0003677\|GO:0006355
	Csa06g01499	345	MobiDBLite	consensus disorder prediction	117	155	-	-
	Csa06g01499	345	MobiDBLite	consensus disorder prediction	11	33	-	-
	Csa06g01499	345	Pfam	Dof domain, zinc finger	75	130	IPR003851	GO:0003677\|GO:0006355
	Csa06g01499	345	MobiDBLite	consensus disorder prediction	9	58	-	-

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Csa01g02399	Csa06g01499	CCT
	Csa01g02399	Csa06g01499	ECH

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Csa05g01834	Csa-Chr5:21688794	Csa06g01499	Csa-Chr6:12669120	5.28E-45	dispersed
	Csa06g01499	Csa-Chr6:12669120	Csa01g00849	Csa-Chr1:5317986	1.95E-32	dispersed
	Csa01g02399	Csa-Chr1:21290901	Csa06g01499	Csa-Chr6:12669120	1.95E-44	wgd
	Csa03g03190	Csa-Chr3:29464183	Csa06g01499	Csa-Chr6:12669120	2.39E-42	wgd
	Csa04g01478	Csa-Chr4:14585987	Csa06g01499	Csa-Chr6:12669120	1.18E-37	wgd
	Csa05g00707	Csa-Chr5:4789391	Csa06g01499	Csa-Chr6:12669120	6.42E-42	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	32021	PF02701	zf-Dof	6.90E-33	No_clan	Csa	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Csa06g01499	-		-	csv:101220917	616.69