Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01519 ATGGAAGACTCTTTAGGGCAAAAGCACAAACCTCAGGAGTTCACTCTTGTTTCGATTTCTGAGCTTGCTTCTTCGTCTTCCTCCTCCTCCTCCTCTTCCTCACCGGTTGTCGCACGGTTCTGCAGCGATTCCGGTGCTGCTGAGCTTCGGTTACGGCAGGAAACCGATTCTGATGACCTTGCTTTCGATCTTCGGACTTCTCAGATATTTCGGTTAGGCCCTGTTCAGTCAGTTTGCATTTCCGAAGGCGATGGCAGTGAAGAGAAATCTCACTCCAGAGGAGTTACCATTCAATTTAGAAATGAGGAAGAGAGCAGTGCGTTTCATTCTGCTTTTGATCAGAGGAAGAAGGATAATATTGTCCAAGGGACCACCCCTTTACCAAATGGTGAAATTTCCTTCTTGAAAAGCAAGTTCGATGATAAAATAGAATCGTCATCTGCAAAGATGTACTTCCACTACTATGGACAACTTCTACACCAACAAAATATGTTGCAGGACTATGTGAGGACAGGGACATATTACGCAGCAGTGATGGAAAATCGTGCTGATTTCACAGGCCGAGTGGTTGTTGATGTTGGTGCTGGTAGTGGTATTTTGTCGTTATTTGCTGCTCAGGCCGGTGCAAAACATGTTTATGCTGTGGAAGCATCTGAAATGGCTGAGTATGCTCGTGTATTAATTGCAGGGAACCCTGCCTTGAGTCAACGAATCACAGTAATTAAAGGCAAAGTTGAGGATGTAGAATTACCTGAGAAAGCAGACATTTTAATCTCAGAGCCAATGGGCACCTTATTGGTCAATGAAAGAATGCTTGAATCGTATGTGATCGCAAGGGATCGTTTTTTGCACCAAAATGGAAAGATGTTCCCGACAATAGGAAGGATTCACATGGCACCTTTCAGTGATGAATATCTATTTGTTGAAGTAGCTAACAAGGCACTCTTTTGGCAGCAACAAAATTATTATGGTGTTGATTTGACAGCCTTGCATGGATCAGCATTTCAAGGCTATTTTTCTCAGCCGGTGGTGGATGCTTTTGATCCAAGATTATTGGTGGCCGCTTCAATGTCTCATGTTTTAGACTTCACAAATGTCAAGGAAGAGGAATTGTATGACATAGATATTCCTCTGAAGTTTGTTGCTTCCGTGGGTGCCAGAATCCATGGATTGGCCTGCTGGTTTGATGTATTATTTAATGGCAGCACCGTGCAGAGATGGCTTACCACTGCCCCAGGTGCCCCAACAACCCATTGGTATCAGTTACGTTGTGTCCTTTCCCAGCCGATTTATGTCATGGCAGGACAGGAAATTACTGGTAGACTTCACATGGTTGCTCACAGTGCTCAGAGTTACACGCTTTATTTGACTCTATCAGCCAAAATGTGGGGACCTGGTGCCGAGCAAGGAGGAATTCTTCAGTCGTCTTCGTGCAAACTTGACCTGAAAGAGCCCTACTATAGAATGTCCCAACCACAAGTCTACCCCGTAGCTCAAGATCAGCAACATCAGCTAATTCCATCACAGGATGTACCAATTCAACCACAGGATTTAGAAGATGCAGATCTGATGCTACAGGCATCACCTAACTCGGGGGCTCCACTCAATTCATTGATAGATTAA 1623 44.49 MEDSLGQKHKPQEFTLVSISELASSSSSSSSSSSPVVARFCSDSGAAELRLRQETDSDDLAFDLRTSQIFRLGPVQSVCISEGDGSEEKSHSRGVTIQFRNEEESSAFHSAFDQRKKDNIVQGTTPLPNGEISFLKSKFDDKIESSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVMENRADFTGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARVLIAGNPALSQRITVIKGKVEDVELPEKADILISEPMGTLLVNERMLESYVIARDRFLHQNGKMFPTIGRIHMAPFSDEYLFVEVANKALFWQQQNYYGVDLTALHGSAFQGYFSQPVVDAFDPRLLVAASMSHVLDFTNVKEEELYDIDIPLKFVASVGARIHGLACWFDVLFNGSTVQRWLTTAPGAPTTHWYQLRCVLSQPIYVMAGQEITGRLHMVAHSAQSYTLYLTLSAKMWGPGAEQGGILQSSSCKLDLKEPYYRMSQPQVYPVAQDQQHQLIPSQDVPIQPQDLEDADLMLQASPNSGAPLNSLID* 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12751769 12758126 - CsaV3_6G017170.1 Csa06g01519 533146

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01519 540 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 1 499 IPR025799 GO:0016274|GO:0018216
Csa06g01519 540 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 154 465 IPR029063 -
Csa06g01519 540 Pfam Ribosomal protein L11 methyltransferase (PrmA) 186 259 - -
Csa06g01519 540 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 144 454 IPR025799 GO:0016274|GO:0018216
Csa06g01519 540 CDD AdoMet_MTases 190 298 - -
Csa06g01519 540 PANTHER HISTONE-ARGININE METHYLTRANSFERASE 1.4-RELATED 1 499 - -
Csa06g01519 540 Gene3D - 293 501 - -
Csa06g01519 540 Gene3D Vaccinia Virus protein VP39 132 291 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01519 K05931 CARM1, PRMT4; type I protein arginine methyltransferase [EC:2.1.1.319] - csv:101217747 1061.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01966 Csa-Chr1:16517547 Csa06g01519 Csa-Chr6:12751769 3.90E-50 dispersed
Csa05g02873 Csa-Chr5:29079568 Csa06g01519 Csa-Chr6:12751769 2.16E-38 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g327 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g01519 . . . . . . Bpe05g00765 . . . . . . . . . . . Cpe17g00025 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005574 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 5 1 1 38