Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01530 ATGGATTTGGTCAAAGAAAATTACCAAGATATTGATGGGAATGAAGATGGATCTCCCGAACAGTCGGTTTCTCAGGAAAATTCTGAAATATGTGATGAATTTTCAGATCCAGAGATTTCTCCTCGAGTCGGTGAAGAATATCAAGTTGAAGTTCCTCCGCTATTGTTGAAATCAGATATAAACTGGCTCCAGAGTTTCAAGGAGGCAGAAATTCAGGGTAGCAGCCTCCATGATTTTTTTGTGGGATTGCCTGTCCAGGTAATGTGGATTTCCGAGGAAGCTCATTGGATGGAGCGTAAGCTACGTGAGGATACAGTGGAGAAATGCAGTAGAAAGGAGGACTTGAAGGGTGAATCATTTCAAGATGAACAGAAAGATGATAGTGCCAAATTGATCATTGAGGCAACGAAAATGACGACAAGTAGTACAATAAAGGTCAGTAAAGCAGCAGATTTAGCTTTGCCAAAAGAAACAGTACTTGCAATTGACACGGATAAGAAGGATAACATCAACGGTTGCCATCTGGTTCCTGGTGTCTCGGGTCAGCCTTGGACTAATATAGAAGAGGCCAGTTTTCTTCTTGGTTTATACATATTTGGGAAAAACCTTGTTTTAGTGAAGAAGTTTGTTGGAAGCAAACAGATGGGGGATATTCTGTCCTTTTACTATGGAAGGTTTTATCGATCAGAAAAATACTGCCGATGGTGTGAATGTCGAAAAACTCGAGGTAGAAAATGTATCTATGGACAGAGATTGTTTAAAGGTTGGAGGCAACAGGAATTGGTTTCTCGGTTGCTTCTTCATGTAGCAGAGGATAACAAGAATGCATTAGTGGAGGTCACAAAATCATTTGGAGATGGCAAATTTTCTTTTGAAGAATACGTGTTTGCTTTAAAGGCCACAGTTGGATTGGAAGCTTTTGTGGAGGCAGTGGGGATTGGTAAAGAGAAGCAAGATCTTACAAGCGTTTCCATGGATCCAGTAAAGTCGAACCATGGTGCTTCTCTCCGCCCTGAAATACCTTCTGGGAAAGCATGTTCTGCCCTTACTCCACTGGAAATTGTCAACTATCTAACAGGAGATTTCAGGTTGAGCAAAGCTCGATCGAGTGATCTCTTCTGGGAAGCTGTTTGGCCCCGTTTGCTTGCTCGTGGATGGCATTCTGAGCAGCCGAGTAATGGTTTTACTGCTGGTATGAAGCATTCATTGGTCTTTCTTGTCCCAGGTATCAAAAAGTTTTCGAGGAGAAAGCTGGTTCGTGGTAACCACTATTTTGATTCAGTCAGTGACGTCCTTGGTAAAGTTGCTTTGGATCCTGGACTACTTGAGCTTGACAGTAATGTTGATAAAGATGGTAAGAGCAATGAAGAAAACGGGTGGACTGATGACTCCAAAGTGGACCAAGAGGAGTTTCCTTCTCAGCAACGCCATTGTTATCTCAAACCAAGAACTCCAGCCAACACTGATATTGTGAAGTTTACTATCGTTGACACCAGTCTTGCTAACGGAAGTGCTTCAAAAATTCGAGAACTTAGAAGTTTACCAGTGGACTTACTAACTGTTTCTTCATCGAGATCTTATTTCGAAAATCATGCCCTATGTTCTTCCAGCGAGTCAATGGAGAAGTCTGATTCTGAAGAGGACCGATGTGTCGACAAGGCTGAGACTGCCGATACTTCTCATGCCTTGAGGAAAAACAAGAAACAAAAAGTAATCTCGAATGGACATTATTCTCCTTCAGATGTTTCAAAGTCAAACCAAGTGCTTCCGGTTAGTTGTGAACCAGATTCTATGGATTCACCTGCAGAAGTTTTGAAGGATCACAGCTGCGTCAAGTTGGATAGCACACGATCTCAGAACGGTATTATGCACCCGTTTAGCCAAAAATCAAGATTGGACAATAAGAGGAAACCTACAAATGCAACCAAAAAACGCAGGAAATTAAATACTTTTGGTTTAAAGTGTACAAGTAATATTTCTGTACCTTCCAAACCAAAAGAGGAGGATGCCTGCTGCAAACCAAAAGAGGATGCCTGCGAGGATTCCTGCTGTAAACCGAAAGAGGAGGATTCCTGCTGCAAACCGAAAGAGGAGGATTCCTGCTGCGAACCGAAAGAAGAGGATTCCTGCTGCAAACCGAAAGAGGAGGATTCCTGCTGCACACCGAAAGAGGAGGATTCCTGCTGCAAACCAAAAGAGGAGGATGCCTGCTGCAAACCGAAAGAGGAGGATGCCTGCTGCTCTAAAGACGGTTCCGATAGTAGCAAAAACATCCTGCCTATTGCAGATCCATTGCAGGAGAAATCTTCTAGTTCATCTGGATGCAGTCCCATATCTAGCCTTGATGGAAACCCAAAGGAAATCGGCCTCAATCAATCTCGTGCTTTAATAGACTTAAACTTGCCCGTTCCTCTCGATGCTGAAACTGACGAACCTGTTATAATGCATATCAGACAAGAACGACCTGACCAAAGAAGCAAGGAACCAAACGATCCTAGTATAGCTAAAAATTCTGAAGTCGTCTCGAACGTTTCTGATCAGCAACTTAATATGAATTCAAGGAGAGTCAGTAGTCGAAACCGACCCCCAACAACTAGAGCGCTAGAAGCAAGAGCTTTAGGATTGTTGGACGTCAAACAGAAGCGAAAGCATAAAGATCCGTTTCTGGATGGGAACTCGATAATTAAGCCATCACGACGTGGTTGTCCAAAGGTGAGACCTACTGAGAACTTGGAAATTAGCATTGAAAAATTCAAGATTGAAGATAGAGCAGTAGTTGTTAGTCCATGTAATAGCAATAGCAATAGTAATAGCAATAGCGAGGTGTTACCTAAGCTTGAAACTTGA 2847 42.54 MDLVKENYQDIDGNEDGSPEQSVSQENSEICDEFSDPEISPRVGEEYQVEVPPLLLKSDINWLQSFKEAEIQGSSLHDFFVGLPVQVMWISEEAHWMERKLREDTVEKCSRKEDLKGESFQDEQKDDSAKLIIEATKMTTSSTIKVSKAADLALPKETVLAIDTDKKDNINGCHLVPGVSGQPWTNIEEASFLLGLYIFGKNLVLVKKFVGSKQMGDILSFYYGRFYRSEKYCRWCECRKTRGRKCIYGQRLFKGWRQQELVSRLLLHVAEDNKNALVEVTKSFGDGKFSFEEYVFALKATVGLEAFVEAVGIGKEKQDLTSVSMDPVKSNHGASLRPEIPSGKACSALTPLEIVNYLTGDFRLSKARSSDLFWEAVWPRLLARGWHSEQPSNGFTAGMKHSLVFLVPGIKKFSRRKLVRGNHYFDSVSDVLGKVALDPGLLELDSNVDKDGKSNEENGWTDDSKVDQEEFPSQQRHCYLKPRTPANTDIVKFTIVDTSLANGSASKIRELRSLPVDLLTVSSSRSYFENHALCSSSESMEKSDSEEDRCVDKAETADTSHALRKNKKQKVISNGHYSPSDVSKSNQVLPVSCEPDSMDSPAEVLKDHSCVKLDSTRSQNGIMHPFSQKSRLDNKRKPTNATKKRRKLNTFGLKCTSNISVPSKPKEEDACCKPKEDACEDSCCKPKEEDSCCKPKEEDSCCEPKEEDSCCKPKEEDSCCTPKEEDSCCKPKEEDACCKPKEEDACCSKDGSDSSKNILPIADPLQEKSSSSSGCSPISSLDGNPKEIGLNQSRALIDLNLPVPLDAETDEPVIMHIRQERPDQRSKEPNDPSIAKNSEVVSNVSDQQLNMNSRRVSSRNRPPTTRALEARALGLLDVKQKRKHKDPFLDGNSIIKPSRRGCPKVRPTENLEISIEKFKIEDRAVVVSPCNSNSNSNSNSEVLPKLET* 949
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12817061 12822042 - CsaV3_6G017280.1 Csa06g01530 533157

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01530 948 MobiDBLite consensus disorder prediction 446 467 - -
Csa06g01530 948 MobiDBLite consensus disorder prediction 764 780 - -
Csa06g01530 948 MobiDBLite consensus disorder prediction 621 643 - -
Csa06g01530 948 MobiDBLite consensus disorder prediction 928 948 - -
Csa06g01530 948 MobiDBLite consensus disorder prediction 1 37 - -
Csa06g01530 948 SUPERFAMILY Homeodomain-like 175 224 IPR009057 -
Csa06g01530 948 MobiDBLite consensus disorder prediction 540 565 - -
Csa06g01530 948 MobiDBLite consensus disorder prediction 811 832 - -
Csa06g01530 948 ProSiteProfiles SANT domain profile. 179 231 IPR017884 -
Csa06g01530 948 PANTHER ATROPHIN-RELATED 697 939 - -
Csa06g01530 948 PANTHER ATROPHIN-RELATED 2 705 - -
Csa06g01530 948 MobiDBLite consensus disorder prediction 685 788 - -
Csa06g01530 948 PANTHER PROTEIN, PUTATIVE-RELATED 697 939 - -
Csa06g01530 948 PANTHER PROTEIN, PUTATIVE-RELATED 2 705 - -
Csa06g01530 948 MobiDBLite consensus disorder prediction 685 750 - -
Csa06g01530 948 MobiDBLite consensus disorder prediction 538 587 - -
Csa06g01530 948 MobiDBLite consensus disorder prediction 14 30 - -
Csa06g01530 948 MobiDBLite consensus disorder prediction 884 906 - -
Csa06g01530 948 MobiDBLite consensus disorder prediction 806 866 - -
Csa06g01530 948 MobiDBLite consensus disorder prediction 572 587 - -
Csa06g01530 948 MobiDBLite consensus disorder prediction 833 864 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01530 - - - csv:101222889 1889.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01454 Csa-Chr3:10847996 Csa06g01530 Csa-Chr6:12817061 4.00E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g311 . Blo12g00019 Bda03g01199 . Bpe04g01130 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g01530 . . . . . . Bpe05g00841 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001104 2 4 2 1 3 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 1 2 2 3 2 2 7 4 3 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g01530 Csa_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0