Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01532 ATGACAATGGGCGAGCGGAAGACTATTGACTTGGAGCAGGGATGGGAGTTTATGCAGAAGGGTATCACAAAGTTGAAGAACATTCTCGAGGGCTTGCCTGAGCCTCAGTTCAGCTCCGAGGACTACATGATGCTTTACACTACCATATATAACATGTGCACCCAAAAGCCGCCGCATGATTACTCCCAGCAGCTGTATGATAAATATCGTGAATCTTTTGAAGAGTACATCACTTCTATGGTCTTACCATCCTTGAGGGAGAAGCACGATGAGTTCATGTTGAGAGAACTAGTAAAAAGGTGGACAAACCATAAAGTCATGGTGAGGTGGCTTTCTCGCTTCTTCCACTATCTTGATCGGTACTTCATCGCTCGAAGGTCACTTCCACCTCTAAATGAAGTTGGCCTCACATGCTTCCGCGAATTGGTGTACAAAGAGCTAAATAGTAAAGTGAGGGATGCAGTAATTTCATTGATTGATCAAGAACGTGAAGGAGAACAGATTGACAGAGCTCTACTGAAGAATGTACTAGATATATTTGTGGAAATTGGTATGGGGCAAATGGATTACTATGAAAATGACTTTGAAGCTGCCATGCTTAAAGATACTGCTGCTTATTACTCTAGGAAGGCTTCCAATTGGATCCTAGAAGATTCTTGTCCCGATTATATGCTTAAAGCAGAGGAGTGCTTGAAACGAGAAAAGGATAGGGTTTCCCACTATTTGCACTCTAGTAGCGAGCCAAAGTTGTTGGAGAAAGTTCAACATGAACTATTATCTGTTTATGCTACTCAACTGCTGGAAAAAGAGCATTCAGGATGCCATGCATTGCTTAGAGATGACAAGGTGGAAGATTTGTCAAGGATGTTCCGTCTATTCTCCAAAATACCGAAGGGACTGGATCCAGTTTCCAACATATTTAAGCAGCATGTAACTGCTGAAGGAACAGCACTGGTCAAACAGGCAGAAGATGCTGCAAGTAACAAGAAGGCTGAGAAAAAGGACATAGTTGGTCTGCAGGAACAGGTTTTTGTAAGAAAAGTGATTGAGCTTCACGACAAGTACTTGGCTTATGTGAATGATTGTTTCCAAAACCACACACTTTTCCATAAGGCTCTCAAGGAAGCTTTTGAAGTATTTTGCAATAAGGGTGTTGCTGGAAGTTCTAGTGCAGAATTGCTTGCTACCTTTTGTGATAACATCCTTAAGAAAGGTGGGAGTGAGAAGTTGAGTGATGAAGCAATCGAGGAGACACTTGAGAAGGTTGTGAAGTTGTTGGCATACATTTGCGACAAAGATCTGTTTGCTGAATTCTATAGAAAAAAACTTGCCCGAAGGCTTCTCTTTGACAAGAGCGCGAACGATGACCACGAGAGAAGTATATTGACCAAATTGAAGCAACAATGTGGTGGTCAGTTCACTTCTAAGATGGAGGGAATGGTTACTGATTTGACTTTGGCAAGGGAGAACCAAACTAGTTTTGAGGAGTATCTGAGCAATAATCCACAAGCGAGTCCTGGCATCGACCTGACTGTTACTGTTTTAACTACTGGATTTTGGCCAAGCTACAAGTCTTTTGACCTCAACCTGCCGGCAGAGATGGTAAAGTGTGTTGAAGTTTTCAGAGAGTTTTATCAAACAAAAACCAAGCATCGAAAACTTACATGGATTTACTCATTGGGTACTTGTAACATCAGTGGAAAATTTGAACCGAAAACGATGGAGCTGATTGTGACAACTTATCAGGCTTCTGCCCTGTTGCTATTCAATTCTTCGGATAGACTAAGTTACTCGGAAATCATGACACAATTAAATTTGAGTGACGATGATGTAGTTAGACTACTCCACTCGTTGTCATGTGCCAAGTATAAAATTCTTAATAAGGAACCAAATACGAAAACCATCTCTCCGAACGATCATTTTGAGTTCAATGCAAAATTCTCCGACAAAATGAGGAGAATAAAGATCCCTCTTCCGCCTGTGGATGAGAAAAAGAAAGTCATTGAAGATGTTGACAAGGATCGAAGGTATGCTATTGACGCCTCAATCGTGCGTATCATGAAGAGTCGGAAAGTTCTTGGTCATCAGCAACTAGTGATGGAGTGCGTCGAGCAATTGGGCCGTATGTTCAAGCCCGATTTCAAGGCGATAAAGAAGAGAATTGAAGACCTGATCACTCGGGATTATCTAGAGAGAGACAAAGACAACCCCCACTTGTTTAGGTACTTGGCTTGA 2235 41.83 MTMGERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYITSMVLPSLREKHDEFMLRELVKRWTNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRELVYKELNSKVRDAVISLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFEAAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYATQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPKGLDPVSNIFKQHVTAEGTALVKQAEDAASNKKAEKKDIVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKALKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYICDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPQASPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNISGKFEPKTMELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPNDHFEFNAKFSDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVMECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKDNPHLFRYLA* 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12830137 12836573 + CsaV3_6G017300.1 Csa06g01532 533159

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01532 744 Gene3D Cullin Repeats 142 263 - -
Csa06g01532 744 PANTHER CULLIN 3 743 IPR045093 -
Csa06g01532 744 PANTHER CULLIN 3B 3 743 - -
Csa06g01532 744 ProSitePatterns Cullin family signature. 717 744 IPR016157 GO:0006511|GO:0031461|GO:0031625
Csa06g01532 744 SMART Cullin_Nedd8_2 671 738 IPR019559 -
Csa06g01532 744 ProSiteProfiles Cullin family profile. 389 619 IPR016158 -
Csa06g01532 744 SUPERFAMILY Cullin repeat-like 11 384 IPR016159 -
Csa06g01532 744 Coils Coil 322 342 - -
Csa06g01532 744 Gene3D Cullin; Chain C, Domain 2 507 660 - -
Csa06g01532 744 Pfam Cullin family 24 647 IPR001373 GO:0006511|GO:0031625
Csa06g01532 744 SUPERFAMILY Cullin homology domain 388 657 IPR036317 -
Csa06g01532 744 Pfam Cullin protein neddylation domain 674 736 IPR019559 -
Csa06g01532 744 Gene3D - 661 744 IPR036388 -
Csa06g01532 744 SMART cul_2 420 569 IPR016158 -
Csa06g01532 744 Gene3D Cullin Repeats 4 141 - -
Csa06g01532 744 Gene3D Cullin Repeats 390 503 - -
Csa06g01532 744 Gene3D Cullin Repeats 267 389 - -
Csa06g01532 744 SUPERFAMILY Winged helix DNA-binding domain 659 744 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01532 K03347 CUL1, CDC53; cullin 1 - csv:101216323 1488.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01705 Csa-Chr5:20255005 Csa06g01532 Csa-Chr6:12830137 2.14E-10 dispersed
Csa01g02232 Csa-Chr1:19368904 Csa06g01532 Csa-Chr6:12830137 3.01E-118 transposed
Csa03g03849 Csa-Chr3:33923917 Csa06g01532 Csa-Chr6:12830137 3.50E-143 transposed
Csa03g01445 Csa-Chr3:10802238 Csa06g01532 Csa-Chr6:12830137 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g309 . . . Bda08g00287 . . . Bma05g01038 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g01532 . . . Blo07g00176 Bda11g00530 . Bpe05g00840 Bpe13g00660 . Bma06g01505 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001518 2 4 1 2 2 2 3 2 2 2 2 2 2 2 2 3 2 3 3 2 2 2 2 2 3 2 2 7 3 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g01532 Csa_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0