Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01540 ATGGCGAAACCCTCGAAGCGACAGGCCTCTTCCGATGAAGCCATGTCCAATGGCACTAGCTCGTCGGAGGAAGAGGAGCAAACTAACGACCAGATCAATGAGGAGGAAGACGAGGAGGAGCTCGAAGCGGTCGCTCGCTCGGCAGGCTCCGACGAAGATGAAGCTGCCGACGATTCTGATAACGATGGATCACCTGTCGAAAATGGCGAGGAAGAGGATGGAAGTAACGACGGCCAAGATGATAAAACTGATATTGGGCGGCGTGAAAAGGCCAGACTAAGAGAAATGCAACAAATGAAGAAGCAGAAGATTCAGGATATGTTAGATGCACAAAATGCTGCTATTGATGCTGATATGAATAACAAGGGGAAAGGACGCTTGAAGTATCTTCTGCAACAAACTGAGATATTTGCTCATTTTGCTAAAGGCGAGCATTCTTCTTCCCAGAAGAAAACGAAGGGAAGGGGTCGCCATGCATCAAAACTAACTGAAGAAGAAGAAGATGAAGAATATCTTAAAGAGGAAGAAGACGGTCTATCTGGAACTGGGAACACTCGTTTACTTTCACAACCATCTTGTATCCAGGGGAAAATGAGAGATTATCAACTAGCTGGATTAAACTGGCTCATTCGGCTATATGAGAATGGCATAAATGGAATCCTTGCTGATGAGATGGGGCTGGGCAAGACATTACAAACCATCTCCTTGTTGGGCTATCTACATGAGTACCGAGGCATAACAGGTCCCCATATGGTAGTTGCTCCAAAATCTACTCTGGGAAATTGGATGAATGAAATTCGTCGATTTTGCCCTGTCTTGCGTGCTGTAAAGTTTCTTGGAAATCCTGATGAAAGGAGGGATATACGGGAAAATTTACTTGTTGCTGGGAAATTTGATGTATGTGTTACCAGTTTTGAAATGGCCATTAAGGAGAAGTCTTGCTTGCGCCGGTTTAGTTGGCGCTACATTATTATTGATGAAGCCCATCGAATTAAGAATGAGAATTCTCTCCTTTCAAAGACAATGAGGCTTTATAACACCAACTACCGTCTTCTAATCACTGGCACACCTCTTCAGAACAATCTTCATGAACTGTGGTCTCTCCTCAATTTCCTTTTGCCTGAAATATTTAGTTCAGCTGAGACTTTTGATGAATGGTTTCAAATTTCTGGGGAAAATGATCAGCAGGAGGTGGTTCAACAACTTCACAAGGTCCTTCGGCCATTTCTTCTTCGGAGGTTGAAATCAGATGTAGAGAAAGGTTTACCTCCAAAAAAGGAAACGATACTCAAAGTAGGCATGTCGCAAATGCAAAAACAGTACTATCGTGCTTTGCTGCAGAAGGATCTTGAAGTTGTTAATGCCGGTGGTGAGCGTAAACGGCTGCTTAATATAGCAATGCAGCTCCGGAAATGCTGTAATCACCCATATTTGTTTCAAGGTGCTGAACCTGGGCCTCCTTACACCACAGGGGACCATCTTATTACTAGTGCTGGTAAAATGGTTCTTTTGGACAAGTTGCTTCCTAAACTGAAAGAGCGTGATTCTAGAGTCCTAATATTTTCGCAGATGACAAGGCTGTTAGATATTCTTGAAGATTATTTAATGTTTCGTGGATACTATTATTGTCGAATTGATGGTAACACTGGTGGTGAAGATCGTGATGCATCCATTGATGCCTTCAACAAGCCTGGAAGTGAAAAATTTGTTTTCTTATTATCAACCAGAGCTGGAGGTCTTGGTATTAATCTTGCTACTGCAGATGTAGTTATTCTTTATGACAGTGACTGGAATCCTCAAGTTGATCTGCAAGCACAAGATCGTGCTCACAGGATTGGTCAGAAGAAGGAAGTTCAAGTGTTCCGGTTTTGCACTGAGTATACCATTGAGGAAAAAGTGATAGAAAGGGCTTACAAGAAACTTGCCCTCGATGCTTTGGTGATTCAACAAGGACGTTTAGCGGAGCAGAAAACTGTCAACAAGGATGAGCTACTTCAAATGGTGAGGTTTGGTGCTGAGATGGTTTTCAGTTCCAAAGATAGCACCATCACAGAAGAGGACATTGACAGAATCATTGCAAAGGGAGAAGCAGCAACAGCAGAGCTTGATGCAAAGATGAAGAAATTTACTGAAGATGCCATTAAATTTAAAATGGATGAAACTGCTGAATTGTACGATTTTGATGATGAAAAGGACGAGAATAAATTTGACTTCAAGAAAATTGTCAGTGAAAATTGGATTGAACCACCTAAAAGAGAACGGAAGCGGAATTACTCAGAATCAGAATACTTTAAGCAAACGATGCGGCAGGGTGGTCCAACAAAACCAAAAGAGCCAAGGATACCTCGCATGCCTCAGTTGCACGATTTCCAGTTTTTCAACACACAAAGGTTGAGTGAACTCTATGAAAAAGAAGTGCGGTATCTCATGCAAACACATCAAAAGAACCAGTTGAAAGACACAATAGATGTCGAAGAGCCTGAAGTGGGCGATCCCTTGACTGCTGAAGAGCTAGAGGAGAAGGAGCGACTCTTAGAGGAAGGATTTTCTTCATGGAGTCGCAGAGATTTCAATACATTTATTAGGGCTTGTGAGAAATATGGGCGAAATGATATAAAAAGTATTGCTTCTGAGATGGAAGGAAAAACGGAAGAAGAAGTTGAGAGATATGCAAAGGTCTTTAAGGAGAGATACAAAGAGTTAAATGATTATGATAGAATCATCAAAAACATAGAAAGAGGGGAAGCAAGAATTTCTCGTAAAGACGAAATAATGAAAGCCATTGGGAAGAAACTGGATCGCTACAAAAATCCATGGCTGGAGCTCAAGATCCAGTATGGCCAGAATAAAGGGAAGTTATATAACGAAGAATGTGATCGTTTCATGATATGCATGGTTCACAAGCTTGGTTACGGAAACTGGGACGAACTGAAGGCAGCATTTCGAACGTCACCCTTGTTTCGATTTGATTGGTTTATCAAGTCACGAACGACACAAGAACTTGCAAGGAGGTGTGATACCCTAATCCGATTAGTGGAGAAAGAAAACCAGGAGCATGACGAAAGGGAGAGACAGGCCCGTAAAGAAAAGAAGCTCGCGAAGAGTATGACACCATCAAAACGTTCCTTAGCAAGGCAAACCGAGAGCCCAACTAATATAAAGAAGCGGAAGCAATTATCAATGGATGATTATGTAAACTCCGGAAAACGAAGGAAGTAA 3219 42.06 MAKPSKRQASSDEAMSNGTSSSEEEEQTNDQINEEEDEEELEAVARSAGSDEDEAADDSDNDGSPVENGEEEDGSNDGQDDKTDIGRREKARLREMQQMKKQKIQDMLDAQNAAIDADMNNKGKGRLKYLLQQTEIFAHFAKGEHSSSQKKTKGRGRHASKLTEEEEDEEYLKEEEDGLSGTGNTRLLSQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPDERRDIRENLLVAGKFDVCVTSFEMAIKEKSCLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITSAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYYYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITEEDIDRIIAKGEAATAELDAKMKKFTEDAIKFKMDETAELYDFDDEKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDTIDVEEPEVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFIKSRTTQELARRCDTLIRLVEKENQEHDERERQARKEKKLAKSMTPSKRSLARQTESPTNIKKRKQLSMDDYVNSGKRRK* 1073
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12898315 12906335 - CsaV3_6G017380.1 Csa06g01540 533167

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01540 1072 ProSiteProfiles SANT domain profile. 847 899 IPR017884 -
Csa06g01540 1072 Coils Coil 93 113 - -
Csa06g01540 1072 MobiDBLite consensus disorder prediction 1016 1036 - -
Csa06g01540 1072 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 761 850 IPR036306 GO:0003677|GO:0006338|GO:0031491
Csa06g01540 1072 SUPERFAMILY Homeodomain-like 851 901 IPR009057 -
Csa06g01540 1072 Pfam Helicase conserved C-terminal domain 501 613 IPR001650 -
Csa06g01540 1072 Gene3D - 419 711 IPR027417 -
Csa06g01540 1072 SMART ultradead3 194 386 IPR014001 -
Csa06g01540 1072 MobiDBLite consensus disorder prediction 9 26 - -
Csa06g01540 1072 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 210 375 IPR014001 -
Csa06g01540 1072 Coils Coil 1009 1032 - -
Csa06g01540 1072 Gene3D ISWI, HAND domain 750 847 IPR036306 GO:0003677|GO:0006338|GO:0031491
Csa06g01540 1072 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 503 654 IPR001650 -
Csa06g01540 1072 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 694 IPR027417 -
Csa06g01540 1072 MobiDBLite consensus disorder prediction 1016 1072 - -
Csa06g01540 1072 Gene3D - 936 1039 - -
Csa06g01540 1072 MobiDBLite consensus disorder prediction 1050 1072 - -
Csa06g01540 1072 MobiDBLite consensus disorder prediction 1 91 - -
Csa06g01540 1072 Coils Coil 22 42 - -
Csa06g01540 1072 CDD SANT 851 895 IPR001005 -
Csa06g01540 1072 PANTHER SNF2/RAD54 HELICASE FAMILY 9 1072 - -
Csa06g01540 1072 CDD DEXHc_SMARCA1_SMARCA5 195 415 IPR044754 GO:0005524
Csa06g01540 1072 Pfam HAND 762 811 IPR015194 GO:0003677|GO:0006338|GO:0031491
Csa06g01540 1072 Gene3D - 848 902 - -
Csa06g01540 1072 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 413 IPR027417 -
Csa06g01540 1072 Pfam SNF2-related domain 211 478 IPR000330 GO:0005524|GO:0140658
Csa06g01540 1072 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 9 1072 - -
Csa06g01540 1072 Gene3D iswi atpase 903 935 - -
Csa06g01540 1072 Gene3D - 199 414 IPR038718 -
Csa06g01540 1072 SMART helicmild6 529 613 IPR001650 -
Csa06g01540 1072 SMART sant 848 897 IPR001005 -
Csa06g01540 1072 SMART sant 950 1011 IPR001005 -
Csa06g01540 1072 MobiDBLite consensus disorder prediction 141 186 - -
Csa06g01540 1072 MobiDBLite consensus disorder prediction 53 78 - -
Csa06g01540 1072 CDD SF2_C_SNF 499 624 - -
Csa06g01540 1072 Pfam SLIDE 905 1015 IPR015195 GO:0003677|GO:0005634|GO:0006338
Csa06g01540 1072 MobiDBLite consensus disorder prediction 27 42 - -
Csa06g01540 1072 SUPERFAMILY Homeodomain-like 903 1025 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01540 K11654 SMARCA5, SNF2H, ISWI; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] - csv:101221495 2041.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00510 Csa-Chr4:3357095 Csa06g01540 Csa-Chr6:12898315 2.68E-148 dispersed
Csa06g00863 Csa-Chr6:6916475 Csa06g01540 Csa-Chr6:12898315 5.86E-105 dispersed
Csa06g01540 Csa-Chr6:12898315 Csa06g02443 Csa-Chr6:21798979 1.14E-162 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g271 . . . . . . . . . . . . . . . Cpe08g00131 . . . . . . . . . . . . . . . . . . . . Csa06g01540 . . . . . . . . . . . . . . . . . . Cpe17g00093 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009268 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32023 PF00176 SNF2_N 1.40E-71 CL0023 Csa TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g01540 Csa_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0