Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01542 ATGGAAGTCATTACCTCTTTCTCTTCTTGTAAATTCCACGCTAAACTTCCCCGTTTCTCCACTTCTTTCTTCTCCGACCACCTCGCTTCCACCACACGCTCTAGTTTCTACCCCGCACGCTTCAATTACAGACGCTTACCCTTTAAAATGGCTGCTCCTCTTCAAGTTTCTGCATCCTCCACCATTGGTGCCTCCGACGAGAAATTGGAGACTTCCTCGTCAGGTTTCACTGGTGCACATGATTTGCTTATAATTGGACCTGGCGTTCTTGGCCGCCTAGTGGCGCAAAAGTGGCGGGAGGAACATCCGGGATGTGAAGTTCATGGGCAGACTTTTACAGCGGATCATCATGAGGAGTTGATACAATTAGGGATTCAACCCTCTTTGAAGGGAGGTGATGTGGGTCGTCGTTTTCCTTACGTCATTTTCTGTGCTCCTCCCTCCCGATCGCCGGACTATCCTGGCGATGTCAGATTGGCTGGATCAAGTTGGGATGGAGAGGGCACCTTTCTTTTCACTTCAAGCTCTGCACCATATGATTGCAATGACAATGGACCATGTGATGAGGACAGTCCAGTCATGCCTATTGGGAGGAGCCCTAGGACAGACCTTCTCTTAAAATCAGAAAAGATAGTAATTGAGTTTGGTGGTTGTGTACTTCGATTGGCTGGACTCTACAAAGCGGATAGAGGGGCGCATTCATATTGGTTAGAGAAGGGGACAGTTGATGTTCGTCCTGATCACATCCTGAATCTTATTCATTATGAGGATGCTGCTTCCCTCTCAGTGGCTATTCTAAAGAAAAAACTTCGTGGACGGATTTTCTTAGGTTGTGATAATCATCCTTTCTCCAGGCAAGAAATCATGGACTTGATGATGAAGAGTGGGAAATTCAGTAAAAAGTTCCAAGGCTTTACTGGAACCAAGGATCCACTAGGAAAGAGATTGAACAACTCGAAAACTCGAGCAGAAATAGGCTGGGAGCCAAAGTACCCAAGTTTCGGTCAGTTCCTTGAAACCATTTAA 1026 46.39 MEVITSFSSCKFHAKLPRFSTSFFSDHLASTTRSSFYPARFNYRRLPFKMAAPLQVSASSTIGASDEKLETSSSGFTGAHDLLIIGPGVLGRLVAQKWREEHPGCEVHGQTFTADHHEELIQLGIQPSLKGGDVGRRFPYVIFCAPPSRSPDYPGDVRLAGSSWDGEGTFLFTSSSAPYDCNDNGPCDEDSPVMPIGRSPRTDLLLKSEKIVIEFGGCVLRLAGLYKADRGAHSYWLEKGTVDVRPDHILNLIHYEDAASLSVAILKKKLRGRIFLGCDNHPFSRQEIMDLMMKSGKFSKKFQGFTGTKDPLGKRLNNSKTRAEIGWEPKYPSFGQFLETI* 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12913955 12917814 + CsaV3_6G017400.1 Csa06g01542 533169

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01542 341 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 30 339 - -
Csa06g01542 341 Gene3D - 77 341 - -
Csa06g01542 341 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 87 338 IPR036291 -
Csa06g01542 341 PANTHER EPIMERASE-RELATED 30 339 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01542 - - - csv:101221257 690.263
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g223 . Blo12g00380 Bda03g00827 . Bpe04g00784 . Bma04g00726 . . . . . . . . . . . . . . . . . Cla06g00402 Cam06g0424 Cec06g0431 Cco06g0431 Clacu06g0410 Cmu06g0410 Cre06g1190 Cone14ag0689 . . . . Csa06g01542 . . . . . . . . . . . . . . . . . Cpe12g00343 Cpe17g00094 Bhi12g01974 . . . . . Lcy12g0892 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007731 1 1 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 4 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g01542 Csa_Chr06 FPKM 24.210838 26.032574 21.110624 18.642866 13.604649 12.861393 13.570493 33.48513 33.494816 35.053547