Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01564 ATGGAAATGGATCACGATTATATGACTGCTCGATTATCTGCTATATGGAACATCATTTGTCTAAAGAGAAGCTTTAAAGAGGACAGAATTCCTTGCCAAATTGAAGAGGGTCTGTTCTTAGGGTCCGTTGGAGCTGCCCATAACAAAGATCAACTGAAGAAATTGAGTATCACTCACATTTTAACCGTTGCTTGTTCAATGCCACCTGCTGATCCAAACGATTTTGTTTATAAAGTAGTACGTGTCTTGGACACTAGAGATGTAGATATTAAACAGCACTTTGACGATTGTTTCACCTTTATCGATGAGGGAAGAAATTCTGGTGGAGTCTTGGTTCATTGCTTTGCTGGAATATCCAGAAGTGTAACCATTACAGTTGCCTACCTGATGAAAAAGCGAGGTATGAACCTAACACAAGCATTGGAACACGTCAAGAGTAGACGACCACAAGCAGCTCCGAACGTTGGTTTCATGGTTCAACTCAAGGACTTTGAAACAGCTCTTCAAGCTAGCAGAGTTGATGAAATGAAACTGTCAAATGTTTAA 546 40.11 MEMDHDYMTARLSAIWNIICLKRSFKEDRIPCQIEEGLFLGSVGAAHNKDQLKKLSITHILTVACSMPPADPNDFVYKVVRVLDTRDVDIKQHFDDCFTFIDEGRNSGGVLVHCFAGISRSVTITVAYLMKKRGMNLTQALEHVKSRRPQAAPNVGFMVQLKDFETALQASRVDEMKLSNV* 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13196304 13203293 - CsaV3_6G018610.1 Csa06g01564 533191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01564 181 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 19 170 - -
Csa06g01564 181 ProSiteProfiles Dual specificity protein phosphatase domain profile. 30 170 IPR020422 GO:0006470|GO:0008138
Csa06g01564 181 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 31 170 IPR029021 -
Csa06g01564 181 Pfam Dual specificity phosphatase, catalytic domain 38 166 IPR000340 GO:0008138|GO:0016311
Csa06g01564 181 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 73 149 IPR000387 GO:0016311|GO:0016791
Csa06g01564 181 SMART dsp_5 30 167 IPR020422 GO:0006470|GO:0008138
Csa06g01564 181 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 1B 19 170 - -
Csa06g01564 181 CDD DSP 31 163 - -
Csa06g01564 181 Gene3D Protein tyrosine phosphatase superfamily 24 178 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03994 Csa-Chr3:34901007 Csa06g01564 Csa-Chr6:13196304 3.94E-19 dispersed
Csa05g02278 Csa-Chr5:25348207 Csa06g01564 Csa-Chr6:13196304 7.26E-20 dispersed
Csa06g01564 Csa-Chr6:13196304 Csa06g02399 Csa-Chr6:21432521 3.93E-14 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01564 - - csv:101211942 366.696