Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01599 ATGGAATTTTTTTTCTCTGCTACATTAGACGATCGTAGTGGCAACGGCCGCCGGACACAGCCGGACCTTGCGGTGGTGGCCATGGGTAATCCGCCGTTGTCTCCACCACTTTTCTCTCCTTCTTCCTTCTTCACTATTCCTCCTGGTATCAGCCCCACCCAATTACTTGATTCCCCTCTTCTTCTCAACTCTTCTCGTATTCTGCTATCGCCGTCCACCGGAGATTTGAGAAAATCAGCAAGTAACTGTTCCGGCCACCACCAACAGAATGTCAAACAAGAACACAACAACATTACTAAATTCTCATTTCCTCCTAATCACACCACAAAATCATCATCATCATCATCAATCTTTCAATCCTCTTCAACATCTGAGGTGCAAACTCAGGCATGGGGTTTGGAATGGGAGAATGACGACCGGGGAGATGGATGGGGGATGAGGAACAGATCAGGATCTGAGGATGGGTTTAATTGGAGAAAATATGGGCAAAAAGTGGTAAAAGGAAGTGAAAATCCTAGAAGCTATTACAAATGTACATTCCCAAATTGCCCTGTTAGAAAACAAGTTGAAAGATCGTTGAATAACAATGGTCAAATTACTGAAATTGTTTACAAAAGTAAACATAACCATCCAAAACCAGACTTCACTAGAAGGTCATCTTCCTCTTTTTCTTCTTCTTCTTCTTCTTCCTCTTTTGAACCTGCGCAGCTAAAGAGTTCAATACCCTCTCACTCTGTAACCACGCCGGAGAACTCTTCAATCACCATTGGGGATGATCATTCCGACCAAGCTCATCCAAGAAGATGGAAAAGTGAGAGTAGTGAGAAGGAAGAAATGATAAGAGGAGGAGGAGGGGTGAAAACAATGAGGGAAGAAAGGATTGTAGTTCAAACAATTAGCAATGTGGACAAATTAGATGATGGTTACTGGTGGAGAAAATATGGACAGAAAGTGGTCAAGGGAAATCCAAATCCAAGGAGCTATTACAAGTGCACATATCCAGGATGTGGAGTGAGGAAGCATATAGAGAGGGCATCCCATGATTTTAGAGCAGTTGTCACTACCTACGAAGGGAAGCACAACCACGATATTCCGACGGCCCGTGCCGGAAAACCAATACTTAGTAATCAGCAGGGTAGAAATAATGAGGTTGTGTCGTCGAGCATTGGTGGTGATCCACGATCGAGTTCAAAGATTTGTAGTGGTACTAATGGATTATTGAGGTTGACAAATATGTTGTGGAATAACAAAGAAGAGGTCGTCGATAACATATACGAGTTGTTATAA 1287 42.89 MEFFFSATLDDRSGNGRRTQPDLAVVAMGNPPLSPPLFSPSSFFTIPPGISPTQLLDSPLLLNSSRILLSPSTGDLRKSASNCSGHHQQNVKQEHNNITKFSFPPNHTTKSSSSSSIFQSSSTSEVQTQAWGLEWENDDRGDGWGMRNRSGSEDGFNWRKYGQKVVKGSENPRSYYKCTFPNCPVRKQVERSLNNNGQITEIVYKSKHNHPKPDFTRRSSSSFSSSSSSSSFEPAQLKSSIPSHSVTTPENSSITIGDDHSDQAHPRRWKSESSEKEEMIRGGGGVKTMREERIVVQTISNVDKLDDGYWWRKYGQKVVKGNPNPRSYYKCTYPGCGVRKHIERASHDFRAVVTTYEGKHNHDIPTARAGKPILSNQQGRNNEVVSSSIGGDPRSSSKICSGTNGLLRLTNMLWNNKEEVVDNIYELL* 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13759828 13764587 - CsaV3_6G018960.1 Csa06g01599 533226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01599 428 MobiDBLite consensus disorder prediction 76 156 - -
Csa06g01599 428 MobiDBLite consensus disorder prediction 362 396 - -
Csa06g01599 428 SUPERFAMILY WRKY DNA-binding domain 297 365 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa06g01599 428 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 32 391 IPR044810 GO:0003700
Csa06g01599 428 MobiDBLite consensus disorder prediction 260 284 - -
Csa06g01599 428 PANTHER WRKY TRANSCRIPTION FACTOR 33-RELATED 32 391 - -
Csa06g01599 428 Pfam WRKY DNA -binding domain 153 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa06g01599 428 Pfam WRKY DNA -binding domain 306 363 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa06g01599 428 SUPERFAMILY WRKY DNA-binding domain 150 213 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa06g01599 428 MobiDBLite consensus disorder prediction 371 396 - -
Csa06g01599 428 ProSiteProfiles WRKY domain profile. 153 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa06g01599 428 Gene3D WRKY domain 146 214 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa06g01599 428 SMART WRKY_cls 305 364 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa06g01599 428 SMART WRKY_cls 152 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa06g01599 428 MobiDBLite consensus disorder prediction 204 284 - -
Csa06g01599 428 MobiDBLite consensus disorder prediction 76 131 - -
Csa06g01599 428 MobiDBLite consensus disorder prediction 216 259 - -
Csa06g01599 428 ProSiteProfiles WRKY domain profile. 300 365 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa06g01599 428 Gene3D WRKY domain 292 358 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03028 Csa-Chr3:28698684 Csa06g01599 Csa-Chr6:13759828 2.95E-81 dispersed
Csa06g01599 Csa-Chr6:13759828 Csa07g00267 Csa-Chr7:2056294 2.48E-15 dispersed
Csa06g01599 Csa-Chr6:13759828 Csa05g03014 Csa-Chr5:30396040 2.41E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32025 PF03106 WRKY 4.10E-26 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01599 K13424 - csv:101205221 667.537