Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01604 ATGGCCACCACAACCTTTTCTTCTCATAACAATATGACGTCGACTATGGCTTTAGCATTAGTCTTATTGGCAGTACTCATGGGAACCTCCTCAGCTCATCTTTCTCCCAACTTCTACCACAACACTTGTCCTAACCTCCTTAGCCTAGTTCGAGCTGGTGTTCGGTCTGCTGTTGCTAAGGAAGCTCGCATGGGTGCTTCCCTTCTCCGTCTCCACTTTCACGATTGTTTCGTCAATGGTTGCGATGGATCGATCCTTCTAGATGATACTCCTACATTTTTAGGAGAGCAAACAGCAGCTCCTAACAATAGATCTGTTAGAGGGTTCAATGTGATTGCCAATATAAAGGAGAAGATAGAAAAAATTTGTCCTGGTGTTGTCTCTTGTGCTGATATTTTGACTTTATCTGCTCGTGACTCTGTTGTAGCATTGGGAGGGCCAAGTTGGAAAGTGAAATTGGGAAGGAGAGATTCCAAAACAGCCAGCTTCTCCGATGTCACTGGTGCCATTCCTCCACCGACCTCCACCCTTGCCACTCTCATCAATCGGTTCAATACCAAAGGCCTTTCCCCAAAGGATTTGGTTGCTTTATCTGGTGCTCACACAATTGGAAAAGCAAGATGTTTGTTTTTCAAGAATCGTATTTACAATGAAACCAATATCGACAAGTCATTTGCTAAGAAAAGACAAAAGAATTGTCCAAGAAATGGAGGAGACGATAATCGTACTCCTTTTGACTTCAGAACCCCAAACCTTTTCGATAACAATTACTACAAGAATCTTTTGGAGAAAAAGGCTTTGCTCCGCTCTGATCAAGTGCTACACAATGGTGGATCCACCGATTCTTTGGTTGAACTCTACAGTCATGACAGTGCAGCTTTTGAATCCGACTTCGTGGCAGCTATGATCAAAATGGGTGACATTGAACCACTCACTGGATTGCAAGGCGAGATCCGCAAAGTCTGTAGTCGACCCAACTAA 981 43.73 MATTTFSSHNNMTSTMALALVLLAVLMGTSSAHLSPNFYHNTCPNLLSLVRAGVRSAVAKEARMGASLLRLHFHDCFVNGCDGSILLDDTPTFLGEQTAAPNNRSVRGFNVIANIKEKIEKICPGVVSCADILTLSARDSVVALGGPSWKVKLGRRDSKTASFSDVTGAIPPPTSTLATLINRFNTKGLSPKDLVALSGAHTIGKARCLFFKNRIYNETNIDKSFAKKRQKNCPRNGGDDNRTPFDFRTPNLFDNNYYKNLLEKKALLRSDQVLHNGGSTDSLVELYSHDSAAFESDFVAAMIKMGDIEPLTGLQGEIRKVCSRPN* 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13801029 13802635 + CsaV3_6G019010.1 Csa06g01604 533231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01604 326 Gene3D Peroxidase, domain 2 171 305 - -
Csa06g01604 326 ProSiteProfiles Plant heme peroxidase family profile. 33 326 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g01604 326 Pfam Peroxidase 50 289 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g01604 326 PRINTS Haem peroxidase superfamily signature 65 79 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g01604 326 PRINTS Haem peroxidase superfamily signature 127 144 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g01604 326 PRINTS Haem peroxidase superfamily signature 145 157 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g01604 326 PRINTS Haem peroxidase superfamily signature 193 208 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g01604 326 PRINTS Haem peroxidase superfamily signature 246 261 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g01604 326 CDD secretory_peroxidase 33 324 IPR033905 GO:0004601|GO:0042744
Csa06g01604 326 PANTHER PEROXIDASE 12 323 - -
Csa06g01604 326 SUPERFAMILY Heme-dependent peroxidases 34 326 IPR010255 GO:0004601|GO:0006979|GO:0020037
Csa06g01604 326 Gene3D - 37 323 - -
Csa06g01604 326 ProSitePatterns Peroxidases active site signature. 65 76 IPR019794 GO:0004601
Csa06g01604 326 PANTHER PEROXIDASE 72-RELATED 12 323 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01604 326 ProSitePatterns Peroxidases proximal heme-ligand signature. 193 203 IPR019793 -
Csa06g01604 326 PRINTS Plant peroxidase signature 43 62 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01604 326 PRINTS Plant peroxidase signature 67 87 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01604 326 PRINTS Plant peroxidase signature 107 120 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01604 326 PRINTS Plant peroxidase signature 126 136 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01604 326 PRINTS Plant peroxidase signature 145 160 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01604 326 PRINTS Plant peroxidase signature 192 204 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01604 326 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01604 326 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01604 326 PRINTS Plant peroxidase signature 300 313 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00978 Csa-Chr5:8923929 Csa06g01604 Csa-Chr6:13801029 3.37E-136 dispersed
Csa06g00217 Csa-Chr6:1493533 Csa06g01604 Csa-Chr6:13801029 7.63E-139 dispersed
Csa06g01604 Csa-Chr6:13801029 Csa06g01607 Csa-Chr6:13836496 9.41E-165 dispersed
Csa06g02923 Csa-Chr6:25335342 Csa06g01604 Csa-Chr6:13801029 2.60E-100 dispersed
Csa06g01602 Csa-Chr6:13780505 Csa06g01604 Csa-Chr6:13801029 7.35E-113 proximal
Csa06g01604 Csa-Chr6:13801029 Csa06g01605 Csa-Chr6:13815526 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01604 K00430 - csv:101208108 641.343