Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01607 ATGGCTTTTACTACTCACACTCCAAAACATGTGGTGCCTTTGGTTCTAGTTTTGCAGCTAACCTTCCTTTTGATGAGCACCTCTTTCGCTCAACTATCCGTTTCTTTCTACTCCAACACTTGCCCTAAGCTCCTCTCTGTAATCCGCTCTGGTGTTCAATCTGCCATCACCAAGGAAGCCCGTATTGGCGCTTCTCTCCTTCGTCTTCACTTCCATGACTGCTTTGTTAACGGATGCGATGGATCAATCCTTTTAGATGATACTGCAACTTTTAGAGGAGAACAAACAGCGCCTCCAAACAATAGGTCTGTTAGAGGCTTTGATGTCATAAAAGCCATCAAGAGTAACATTGAAAAAGTTTGTCCTGGTGTGGTCTCATGTGCTGATATTTTGACTCTTGCTGCACGTGATTCTGTTAACATTTTGGGAGGGCCAACATGGGAAGTGAAATTAGGAAGAAGAGATTCAAAAACAGCCAGCTTCTCTGCTGCTAGTAGTGGCATCATCCCTCCCCCTACTTCAACCCTTTCCAACCTCATCAATCGATTCAATGTTGTAGGACTCTCCGCCAAAGACATGGTTGCCTTGTCTGGTGCACACACGATAGGCCAAGCAAGGTGTGTAACCTTTAGAAATCGCATATACAACGAGAGCAACATAGACGTCTCATTCGCGAAGCTAAGACAAAGGAGTTGTCCAAGAAGTGGAGGAGATGACAATCTTGCCCCTCTAGATTTTACAACCCCAAAGTTTTTTGATAACAATTACTACAAGAACCTTTTGAATAATAAGGGGTTGCTCCACTCTGACCAGGTCCTCCACAATGGCGGATCCACCGATTCTTTGGTCCAACAGTATAGTCAAAATGATAAGACTTTTGACACTGATTTTGTGACAGCAATGATTAAAATGGGAGACATTCAACCGCTCACTGGATCACAGGGCGAGATCAGAAAAGTCTGCAACAGACCAAACTGA 978 44.07 MAFTTHTPKHVVPLVLVLQLTFLLMSTSFAQLSVSFYSNTCPKLLSVIRSGVQSAITKEARIGASLLRLHFHDCFVNGCDGSILLDDTATFRGEQTAPPNNRSVRGFDVIKAIKSNIEKVCPGVVSCADILTLAARDSVNILGGPTWEVKLGRRDSKTASFSAASSGIIPPPTSTLSNLINRFNVVGLSAKDMVALSGAHTIGQARCVTFRNRIYNESNIDVSFAKLRQRSCPRSGGDDNLAPLDFTTPKFFDNNYYKNLLNNKGLLHSDQVLHNGGSTDSLVQQYSQNDKTFDTDFVTAMIKMGDIQPLTGSQGEIRKVCNRPN* 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13836496 13838355 + CsaV3_6G019040.1 Csa06g01607 533234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01607 325 Pfam Peroxidase 49 289 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g01607 325 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01607 325 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01607 325 PRINTS Plant peroxidase signature 105 118 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01607 325 PRINTS Plant peroxidase signature 124 134 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01607 325 PRINTS Plant peroxidase signature 143 158 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01607 325 PRINTS Plant peroxidase signature 191 203 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01607 325 PRINTS Plant peroxidase signature 243 258 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01607 325 PRINTS Plant peroxidase signature 259 276 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01607 325 PRINTS Plant peroxidase signature 299 312 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01607 325 PANTHER PEROXIDASE 15 324 - -
Csa06g01607 325 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g01607 325 PRINTS Haem peroxidase superfamily signature 125 142 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g01607 325 PRINTS Haem peroxidase superfamily signature 143 155 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g01607 325 PRINTS Haem peroxidase superfamily signature 192 207 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g01607 325 PRINTS Haem peroxidase superfamily signature 245 260 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g01607 325 ProSitePatterns Peroxidases proximal heme-ligand signature. 192 202 IPR019793 -
Csa06g01607 325 Gene3D Peroxidase, domain 2 170 304 - -
Csa06g01607 325 PANTHER PEROXIDASE 72-RELATED 15 324 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01607 325 ProSiteProfiles Plant heme peroxidase family profile. 31 325 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g01607 325 Gene3D - 36 322 - -
Csa06g01607 325 CDD secretory_peroxidase 31 323 IPR033905 GO:0004601|GO:0042744
Csa06g01607 325 SUPERFAMILY Heme-dependent peroxidases 31 325 IPR010255 GO:0004601|GO:0006979|GO:0020037
Csa06g01607 325 ProSitePatterns Peroxidases active site signature. 63 74 IPR019794 GO:0004601
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01604 Csa-Chr6:13801029 Csa06g01607 Csa-Chr6:13836496 9.41E-165 dispersed
Csa06g01607 Csa-Chr6:13836496 Csa07g00473 Csa-Chr7:3441475 6.58E-123 dispersed
Csa06g01605 Csa-Chr6:13815526 Csa06g01607 Csa-Chr6:13836496 3.20E-167 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01607 K00430 - csv:101207371 626.32