Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g01609 | ATGAGACTTGTTAGACATCCCAATATTCTTCGTCTATATGAGGTTATGGCTACCAAGACTAAGATCTACTTTGTTTTGGAATATGCCAAAGGTGGTGAGCTCTTTGATAAGGTTGCTAAAGGGAAGCTGAAGGAGGACGTTGCTTGGAAATACTTTTATCAGTTAATTAATGCTGTTGATTTTTGTCACAGTAGGGGAGTGTATCACCGCGATATAAAGCCAGAGAACCTACTGCTTGATGAAAATGAGAATCTTAAGGTGTCTGATTTTGGTTTAAGTGCTTTAGCTGAGTCCAAGCGTCAAGACGGTTTGCTACACACGACTTGTGGAACACCAGCTTATGTTGCTCCTGAAGTCATCAATAGGAAGGGCTATGATGGTGCCAAAGCTGATATCTGGTCTTGTGGAGTAGTTTTGTTTGTCCTATTGGCAGGTTATCTCCCATTCCACAATTCGAATTTGATGGAAATGTATAGGAAGATCGGAAAAGCAGAGTATAAATGCCCCAGTTGGTTTCCTCGTGAAGTGCGGCGGCTGCTAAGCAGGATGCTTGATCCAGACCCCAATACTAGGACTTCAATAGCATTGATAAGACAAAGTTCTTGGTTCAAAAAGGGATTGAGGTCTAAGAATGCAAGAAGTGGGGTAGAAAGCAATGCTGTAGCACCTGAAGATGCCACGGCTGGTTCCGGACCATCTGAGGGAAGTGTGGCAGCAGATGGAAATCAAGAGCCAGATAGACCTCCAACTTTGAATGCTTTCGATATCATCTCCCTTTCCGCTGGCTTCAATTTATCCAGTTTATTTGAAGACAATTCAAAGAAGAAAGAAACATTGTTTACTTGTAGAAAACCAGCCTCTGTTATTCTCTCAAAACTAGAAGAAATGGCTAAACTTCTTCGGTTTCGAGTACAGAAGAAGGAAGCAGGCCTATTAAAGTTTGAGGCGCTAACAGAGGGAAAAAAGGGGGCATTATCCATTGATACAGAGATCTTTGAGGTTACTCCATCTTTTTATTTAGTGGAAATGAAAAAATCAAATGGAGACACATTGGAATATCAGAAGGTATTGAAAGAAGACATTAGGCCAGCTCTAAAAGATATAGTATGGGTTTGGCGAGGAGAGCAAGAACAGCAGCAACAAGATCCACAGCCTCAGCCTCTCCAGCCACAGGATCAAGTTCGAGATCCTTATCCAGAGCAAGATGGTGCATCACAACCGCAATAG | 1227 | 42.22 | MRLVRHPNILRLYEVMATKTKIYFVLEYAKGGELFDKVAKGKLKEDVAWKYFYQLINAVDFCHSRGVYHRDIKPENLLLDENENLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVINRKGYDGAKADIWSCGVVLFVLLAGYLPFHNSNLMEMYRKIGKAEYKCPSWFPREVRRLLSRMLDPDPNTRTSIALIRQSSWFKKGLRSKNARSGVESNAVAPEDATAGSGPSEGSVAADGNQEPDRPPTLNAFDIISLSAGFNLSSLFEDNSKKKETLFTCRKPASVILSKLEEMAKLLRFRVQKKEAGLLKFEALTEGKKGALSIDTEIFEVTPSFYLVEMKKSNGDTLEYQKVLKEDIRPALKDIVWVWRGEQEQQQQDPQPQPLQPQDQVRDPYPEQDGASQPQ* | 409 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 13847653 | 13851218 | + | CsaV3_6G019060.1 | Csa06g01609 | 533236 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g01609 | 408 | Pfam | NAF domain | 248 | 306 | IPR004041 | GO:0007165 | |
Csa06g01609 | 408 | MobiDBLite | consensus disorder prediction | 375 | 391 | - | - | |
Csa06g01609 | 408 | Gene3D | Kinase associated domain 1, KA1 | 246 | 371 | - | - | |
Csa06g01609 | 408 | ProSiteProfiles | NAF domain profile. | 246 | 270 | IPR018451 | GO:0007165 | |
Csa06g01609 | 408 | ProSiteProfiles | Protein kinase domain profile. | 1 | 203 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa06g01609 | 408 | SUPERFAMILY | Protein kinase-like (PK-like) | 1 | 204 | IPR011009 | - | |
Csa06g01609 | 408 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 67 | 79 | IPR008271 | GO:0004672|GO:0006468 | |
Csa06g01609 | 408 | MobiDBLite | consensus disorder prediction | 214 | 250 | - | - | |
Csa06g01609 | 408 | PANTHER | - | 1 | 385 | - | - | |
Csa06g01609 | 408 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1 | 233 | - | - | |
Csa06g01609 | 408 | SMART | serkin_6 | 1 | 203 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa06g01609 | 408 | Pfam | Protein kinase domain | 1 | 203 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa06g01609 | 408 | CDD | CIPK_C | 252 | 366 | - | - | |
Csa06g01609 | 408 | PANTHER | CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 | 1 | 385 | - | - | |
Csa06g01609 | 408 | MobiDBLite | consensus disorder prediction | 375 | 408 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa01g02575 | Csa06g01609 | CCT | |
Csa01g02575 | Csa06g01609 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa04g01680 | Csa-Chr4:16146628 | Csa06g01609 | Csa-Chr6:13847653 | 7.73E-87 | dispersed | |
Csa06g01609 | Csa-Chr6:13847653 | Csa02g00268 | Csa-Chr2:1847249 | 5.82E-147 | dispersed | |
Csa06g01609 | Csa-Chr6:13847653 | Csa01g02318 | Csa-Chr1:20282952 | 8.83E-179 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78365 | PF00069 | Pkinase | 6.30E-59 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g01609 | - | - | csv:101206404 | 782.711 |