Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01609 ATGAGACTTGTTAGACATCCCAATATTCTTCGTCTATATGAGGTTATGGCTACCAAGACTAAGATCTACTTTGTTTTGGAATATGCCAAAGGTGGTGAGCTCTTTGATAAGGTTGCTAAAGGGAAGCTGAAGGAGGACGTTGCTTGGAAATACTTTTATCAGTTAATTAATGCTGTTGATTTTTGTCACAGTAGGGGAGTGTATCACCGCGATATAAAGCCAGAGAACCTACTGCTTGATGAAAATGAGAATCTTAAGGTGTCTGATTTTGGTTTAAGTGCTTTAGCTGAGTCCAAGCGTCAAGACGGTTTGCTACACACGACTTGTGGAACACCAGCTTATGTTGCTCCTGAAGTCATCAATAGGAAGGGCTATGATGGTGCCAAAGCTGATATCTGGTCTTGTGGAGTAGTTTTGTTTGTCCTATTGGCAGGTTATCTCCCATTCCACAATTCGAATTTGATGGAAATGTATAGGAAGATCGGAAAAGCAGAGTATAAATGCCCCAGTTGGTTTCCTCGTGAAGTGCGGCGGCTGCTAAGCAGGATGCTTGATCCAGACCCCAATACTAGGACTTCAATAGCATTGATAAGACAAAGTTCTTGGTTCAAAAAGGGATTGAGGTCTAAGAATGCAAGAAGTGGGGTAGAAAGCAATGCTGTAGCACCTGAAGATGCCACGGCTGGTTCCGGACCATCTGAGGGAAGTGTGGCAGCAGATGGAAATCAAGAGCCAGATAGACCTCCAACTTTGAATGCTTTCGATATCATCTCCCTTTCCGCTGGCTTCAATTTATCCAGTTTATTTGAAGACAATTCAAAGAAGAAAGAAACATTGTTTACTTGTAGAAAACCAGCCTCTGTTATTCTCTCAAAACTAGAAGAAATGGCTAAACTTCTTCGGTTTCGAGTACAGAAGAAGGAAGCAGGCCTATTAAAGTTTGAGGCGCTAACAGAGGGAAAAAAGGGGGCATTATCCATTGATACAGAGATCTTTGAGGTTACTCCATCTTTTTATTTAGTGGAAATGAAAAAATCAAATGGAGACACATTGGAATATCAGAAGGTATTGAAAGAAGACATTAGGCCAGCTCTAAAAGATATAGTATGGGTTTGGCGAGGAGAGCAAGAACAGCAGCAACAAGATCCACAGCCTCAGCCTCTCCAGCCACAGGATCAAGTTCGAGATCCTTATCCAGAGCAAGATGGTGCATCACAACCGCAATAG 1227 42.22 MRLVRHPNILRLYEVMATKTKIYFVLEYAKGGELFDKVAKGKLKEDVAWKYFYQLINAVDFCHSRGVYHRDIKPENLLLDENENLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVINRKGYDGAKADIWSCGVVLFVLLAGYLPFHNSNLMEMYRKIGKAEYKCPSWFPREVRRLLSRMLDPDPNTRTSIALIRQSSWFKKGLRSKNARSGVESNAVAPEDATAGSGPSEGSVAADGNQEPDRPPTLNAFDIISLSAGFNLSSLFEDNSKKKETLFTCRKPASVILSKLEEMAKLLRFRVQKKEAGLLKFEALTEGKKGALSIDTEIFEVTPSFYLVEMKKSNGDTLEYQKVLKEDIRPALKDIVWVWRGEQEQQQQDPQPQPLQPQDQVRDPYPEQDGASQPQ* 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13847653 13851218 + CsaV3_6G019060.1 Csa06g01609 533236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01609 408 Pfam NAF domain 248 306 IPR004041 GO:0007165
Csa06g01609 408 MobiDBLite consensus disorder prediction 375 391 - -
Csa06g01609 408 Gene3D Kinase associated domain 1, KA1 246 371 - -
Csa06g01609 408 ProSiteProfiles NAF domain profile. 246 270 IPR018451 GO:0007165
Csa06g01609 408 ProSiteProfiles Protein kinase domain profile. 1 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01609 408 SUPERFAMILY Protein kinase-like (PK-like) 1 204 IPR011009 -
Csa06g01609 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 67 79 IPR008271 GO:0004672|GO:0006468
Csa06g01609 408 MobiDBLite consensus disorder prediction 214 250 - -
Csa06g01609 408 PANTHER - 1 385 - -
Csa06g01609 408 Gene3D Transferase(Phosphotransferase) domain 1 1 233 - -
Csa06g01609 408 SMART serkin_6 1 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01609 408 Pfam Protein kinase domain 1 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01609 408 CDD CIPK_C 252 366 - -
Csa06g01609 408 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 1 385 - -
Csa06g01609 408 MobiDBLite consensus disorder prediction 375 408 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02575 Csa06g01609 CCT
Csa01g02575 Csa06g01609 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01680 Csa-Chr4:16146628 Csa06g01609 Csa-Chr6:13847653 7.73E-87 dispersed
Csa06g01609 Csa-Chr6:13847653 Csa02g00268 Csa-Chr2:1847249 5.82E-147 dispersed
Csa06g01609 Csa-Chr6:13847653 Csa01g02318 Csa-Chr1:20282952 8.83E-179 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78365 PF00069 Pkinase 6.30E-59 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01609 - - csv:101206404 782.711