Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01610 ATGCCGGAGATCGAACCATCTTCCCCCGACAGCAATGCCCTCTTCGGCAAATACGAGCTTGGCAAGCTCCTCGGCTGCGGCGCCTTTGCCAAGGTCTACCATGCTCGCGACCTCCGCTCCGGCCAAAGCGTCGCCGTTAAGGTTATCAACAAGAAGAAGATCTACGGCACAACCTTGATGTTCAACATTAAGCGAGAGATCGCCATTATGCGCCGTCTCCGTCATCCTAACATCGTTAAACTCCATGAGGTTCTCGCTACCAAATCTAAGATCTACTTCGTTATGGAGTTCGTCAAAGGCGGCGAGCTTTTCGCTAAGATCGCCAAGGGCAGATTCAGTGAAGATCTCAGCCGGAGATTCTTCCACCAGCTGATCTCCGCCGTTGGATTCTGTCATACGCGTGGGATTTACCACCGCGATCTGAAGCCGGAGAATCTTCTCGTCGATGAGAACGGGAATCTTAAGGTCTCTGACTTTGGTCTCAGTGCGGTTACGGAACAGATCCGTGCCGATGGCCTTTTGCACACTCTTTGTGGAACTCCGGCCTATGTCGCGCCGGAGATTTTGTCCAAAAAGGGATACGACGGTGCGAAGGTTGATGTGTGGTCATGTGGTGTGATTCTTTTCGTGTTGAGCGCCGGTTACCTTCCCTTCAACGATCCGAATCTCATGGCCATGTATAAGAAGATTTACAAGGGGGAATATCGGTGCCCTAAATGGATGTCGTCGGATCTCAAGAGGTTTCTGTCGCGACTTCTAGATACGAATCCTGATTCGAGGATAACCATCGAAGAAATTCTTAATGATCCATGGTTCAGAAAAGGAGGAAATACAGAGATCAACTTCTACGATAATTACGAGATGAAATCAGAAGAGAAAGACGAATCTCCATCGACGGATTTGAATGCATTCGACATTATATCTTTCTCATCTGGATTGAATCTGTCTGGTTTGTTCGATAATTCACAAAACGTTATGGATGACAGTGATCGATTCATATCGGCAGAGTCACCGGAGAAGATCGTGGAAAAAATTGAGAAATTCGGCAAGGCTGAGGATTTAAAGGTGAAGAAACAGAAAGAGTTTGGATTTGAATTGGATGCAAAGAATCGTGTTTTGGTAATCGGAATAGAACTTTTCCGGTTAACAGACGAATTGGTGGTGGTGGAGATGAGAAGAAGATGCGGAGATTCAGAATCGTATAAGAAAATGTTGAAGAAGAAGCTGAAAATCCATCTAACCGGCGATGACGCGTCGACGTCGACTTCCCAATAG 1275 46.9 MPEIEPSSPDSNALFGKYELGKLLGCGAFAKVYHARDLRSGQSVAVKVINKKKIYGTTLMFNIKREIAIMRRLRHPNIVKLHEVLATKSKIYFVMEFVKGGELFAKIAKGRFSEDLSRRFFHQLISAVGFCHTRGIYHRDLKPENLLVDENGNLKVSDFGLSAVTEQIRADGLLHTLCGTPAYVAPEILSKKGYDGAKVDVWSCGVILFVLSAGYLPFNDPNLMAMYKKIYKGEYRCPKWMSSDLKRFLSRLLDTNPDSRITIEEILNDPWFRKGGNTEINFYDNYEMKSEEKDESPSTDLNAFDIISFSSGLNLSGLFDNSQNVMDDSDRFISAESPEKIVEKIEKFGKAEDLKVKKQKEFGFELDAKNRVLVIGIELFRLTDELVVVEMRRRCGDSESYKKMLKKKLKIHLTGDDASTSTSQ* 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13852353 13854663 - CsaV3_6G019070.1 Csa06g01610 533237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01610 424 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01610 424 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Csa06g01610 424 Gene3D Kinase associated domain 1, KA1 297 415 - -
Csa06g01610 424 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01610 424 Gene3D Transferase(Phosphotransferase) domain 1 100 278 - -
Csa06g01610 424 Gene3D Phosphorylase Kinase; domain 1 5 99 - -
Csa06g01610 424 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01610 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Csa06g01610 424 CDD CIPK_C 302 401 - -
Csa06g01610 424 SUPERFAMILY Protein kinase-like (PK-like) 15 282 IPR011009 -
Csa06g01610 424 PANTHER - 7 419 - -
Csa06g01610 424 Pfam NAF domain 299 358 IPR004041 GO:0007165
Csa06g01610 424 ProSiteProfiles NAF domain profile. 296 320 IPR018451 GO:0007165
Csa06g01610 424 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 14 7 419 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01109 Csa-Chr2:10872284 Csa06g01610 Csa-Chr6:13852353 8.71E-130 dispersed
Csa03g01272 Csa-Chr3:9724996 Csa06g01610 Csa-Chr6:13852353 2.08E-125 dispersed
Csa06g01610 Csa-Chr6:13852353 Csa04g02637 Csa-Chr4:25743103 1.91E-149 dispersed
Csa06g01610 Csa-Chr6:13852353 Csa06g03710 Csa-Chr6:29666281 3.72E-165 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78366 PF00069 Pkinase 1.30E-72 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01610 - K12761 csv:101204001 832.787