Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g01613 | ATGTTTAAGAATACTCGAGCTGGGAGTCCCAGCAGCAACCTCCATGATTGCAAATCAGAATTTGGGTACGTTGAGACCGATCCGACATGTCGTTACGGCCGTTTCGAAGAAGTTTTGGGAAAAGGGGCCATGAAGACAGTGTACAAAGCCATTGATGAGTTTCTTGGAATAGAGGTGGCGTGGAGTCAGGTGAAACTCAACGAGGTCCTCCGATCGCCCGAGGATTTGCAACGGCTGTATTCAGAGGTTCATCTACTTAGCACGCTTAAGCACGAATCGATCATGCGATTCTACACCTCATGGATTGATGTTGATAAAAAAACCTTCAACTTCATTACTGAACTGTTTACTTCTGGAACGCTCAGAGAATACGGAAAGAAATATAGGCGAGTTGATATCAGAGCCATTAAGAGCTGGGCGAGGCAGATTCTGCAGGGACTCATTTATTTGCACGAACACGACCCTCCAATAATACACAGAGATCTGAAGTGTGATAATATCTTTGTGAATGGCCATCTTGGGCAAGTCAAGATTGGTGACTTGGGGCTTGCAGCTATACTTCATGGTTCCAGATCTGCTCACAGTGTTATAGGCACACCGGAGTTTATGGCACCGGAATTATACGAGGAGAATTACAATGAGCTAGTTGATGTCTACTCGTTTGGCATGTGTGTCCTAGAGATGCTTACTTCGGAGTACCCTTATAGCGAATGTTCTAATCCTGCACAAATTTACAAGAAAGTCACGTCGGGGAAGCTACCAGCAGCATTATACAAGATTCAAGATGTGGATGCGCAGAGATTTATTAAGAAATGCTTGGTACCAGTTTCGATGAGGGCGTCTGCGAAGGAACTCTTGGCTGATTCTTTTCTCAAAGTTGATGGAAATAGACCTTCATCGGTGGGGAGGACTCAAAACCAGAAGCCATTTCTAAATGCCAAAGAAATGGAGAATTTTCACTTGAGTGAAGGTTTAAGCAGGACCAACATGACGATCACGGGAAAGCTGAACCCCGAAGACGATACCCTCTTTCTTAGAGTTCAGACTGCCGATAAAGATGGCTCGCTTAGAAACATATACTTCCCTTTCGACATAGTTAATGACACAGCATTAGATGTGGCAATGGAGATGGTGAAAGAATTGGAGATCTCTGATTGGGAGCCGTTTGAAATTGCGGACATGATTGAAGGTGAGATATCGGCTCTGGTTCCAAACTGGAATAGAAGTGAGTTAACCAACCATAGCCTCGGCTTCAGCTGTGCAGAAGAAGATGATAATGTATCTCATCATACTTTCCGCTCGATCTCCTCGTCGTCCCAAGCAACAACTTTGGGTCTTATCTCCTCCCCAAGAACAAACCAAAACATTTCAAATGGTTTTAGTTGGTTCCCAGATGATACGCTTGATGATAGCAGTTCACAATGCTCATCAGCGTCGGGAAAATACTCCAACTTGAATTACATCAGCAGCGACGAGTATGAGACCAGCATGAGTTCAGTCCAGACAGATCAACATAACAACATCAATAAGATTCACAATTCCTCAAGATTTTGTCCTATTGAGAACCGCAAAAGCAAGGATTTTTTGGCTCAACTTCTATACAAGCAGAGCCAATGTGCGATAGCAGGGTCGTCTCAAGGAGTTGCCTCTGGTCGCAAAGACAAGAAAGGAACAGATGGTCGTAAATTAACTAGGAACAGATCACTAGTAGATGTACATAGCCAATTGCTGCATCGTTCGTTAGTGGAGGAAGTGAATAGAAGACGGTTATTCAAGACAGTTGGAGCAGTCGAAAGTATAGGCTTTCAAGCACCTTGTGAGGTTTCTTCGAGCAAAAGGGTCTCGAGTAGGCAACCGATTGGGAACCGAAGTAGTGATGTAGCAAGAACGAGGAGAAACGAGGATATTAGATGGCAAGATGTTGGAAGGAGAACATGA | 1938 | 44.17 | MFKNTRAGSPSSNLHDCKSEFGYVETDPTCRYGRFEEVLGKGAMKTVYKAIDEFLGIEVAWSQVKLNEVLRSPEDLQRLYSEVHLLSTLKHESIMRFYTSWIDVDKKTFNFITELFTSGTLREYGKKYRRVDIRAIKSWARQILQGLIYLHEHDPPIIHRDLKCDNIFVNGHLGQVKIGDLGLAAILHGSRSAHSVIGTPEFMAPELYEENYNELVDVYSFGMCVLEMLTSEYPYSECSNPAQIYKKVTSGKLPAALYKIQDVDAQRFIKKCLVPVSMRASAKELLADSFLKVDGNRPSSVGRTQNQKPFLNAKEMENFHLSEGLSRTNMTITGKLNPEDDTLFLRVQTADKDGSLRNIYFPFDIVNDTALDVAMEMVKELEISDWEPFEIADMIEGEISALVPNWNRSELTNHSLGFSCAEEDDNVSHHTFRSISSSSQATTLGLISSPRTNQNISNGFSWFPDDTLDDSSSQCSSASGKYSNLNYISSDEYETSMSSVQTDQHNNINKIHNSSRFCPIENRKSKDFLAQLLYKQSQCAIAGSSQGVASGRKDKKGTDGRKLTRNRSLVDVHSQLLHRSLVEEVNRRRLFKTVGAVESIGFQAPCEVSSSKRVSSRQPIGNRSSDVARTRRNEDIRWQDVGRRT* | 646 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 13870760 | 13874092 | - | CsaV3_6G019100.1 | Csa06g01613 | 533240 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g01613 | 645 | SMART | serkin_6 | 33 | 291 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa06g01613 | 645 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK4-RELATED | 13 | 626 | - | - | |
Csa06g01613 | 645 | Gene3D | Transferase(Phosphotransferase) domain 1 | 116 | 296 | - | - | |
Csa06g01613 | 645 | Gene3D | Phosphorylase Kinase; domain 1 | 17 | 114 | - | - | |
Csa06g01613 | 645 | MobiDBLite | consensus disorder prediction | 611 | 631 | - | - | |
Csa06g01613 | 645 | MobiDBLite | consensus disorder prediction | 611 | 626 | - | - | |
Csa06g01613 | 645 | Pfam | Protein kinase domain | 36 | 291 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa06g01613 | 645 | CDD | STKc_WNK | 31 | 291 | - | - | |
Csa06g01613 | 645 | ProSiteProfiles | Protein kinase domain profile. | 33 | 291 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa06g01613 | 645 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 13 | 626 | - | - | |
Csa06g01613 | 645 | MobiDBLite | consensus disorder prediction | 544 | 565 | - | - | |
Csa06g01613 | 645 | SUPERFAMILY | Protein kinase-like (PK-like) | 35 | 292 | IPR011009 | - | |
Csa06g01613 | 645 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 157 | 169 | IPR008271 | GO:0004672|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa04g01684 | Csa-Chr4:16267499 | Csa06g01613 | Csa-Chr6:13870760 | 0 | dispersed | |
Csa06g01613 | Csa-Chr6:13870760 | Csa07g01167 | Csa-Chr7:11442874 | 4.06E-165 | dispersed | |
Csa06g01613 | Csa-Chr6:13870760 | Csa03g00442 | Csa-Chr3:3747292 | 6.23E-114 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78367 | PF00069 | Pkinase | 9.40E-47 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g01613 | K08867 | - | csv:101203757 | 1263.83 |