Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01613 ATGTTTAAGAATACTCGAGCTGGGAGTCCCAGCAGCAACCTCCATGATTGCAAATCAGAATTTGGGTACGTTGAGACCGATCCGACATGTCGTTACGGCCGTTTCGAAGAAGTTTTGGGAAAAGGGGCCATGAAGACAGTGTACAAAGCCATTGATGAGTTTCTTGGAATAGAGGTGGCGTGGAGTCAGGTGAAACTCAACGAGGTCCTCCGATCGCCCGAGGATTTGCAACGGCTGTATTCAGAGGTTCATCTACTTAGCACGCTTAAGCACGAATCGATCATGCGATTCTACACCTCATGGATTGATGTTGATAAAAAAACCTTCAACTTCATTACTGAACTGTTTACTTCTGGAACGCTCAGAGAATACGGAAAGAAATATAGGCGAGTTGATATCAGAGCCATTAAGAGCTGGGCGAGGCAGATTCTGCAGGGACTCATTTATTTGCACGAACACGACCCTCCAATAATACACAGAGATCTGAAGTGTGATAATATCTTTGTGAATGGCCATCTTGGGCAAGTCAAGATTGGTGACTTGGGGCTTGCAGCTATACTTCATGGTTCCAGATCTGCTCACAGTGTTATAGGCACACCGGAGTTTATGGCACCGGAATTATACGAGGAGAATTACAATGAGCTAGTTGATGTCTACTCGTTTGGCATGTGTGTCCTAGAGATGCTTACTTCGGAGTACCCTTATAGCGAATGTTCTAATCCTGCACAAATTTACAAGAAAGTCACGTCGGGGAAGCTACCAGCAGCATTATACAAGATTCAAGATGTGGATGCGCAGAGATTTATTAAGAAATGCTTGGTACCAGTTTCGATGAGGGCGTCTGCGAAGGAACTCTTGGCTGATTCTTTTCTCAAAGTTGATGGAAATAGACCTTCATCGGTGGGGAGGACTCAAAACCAGAAGCCATTTCTAAATGCCAAAGAAATGGAGAATTTTCACTTGAGTGAAGGTTTAAGCAGGACCAACATGACGATCACGGGAAAGCTGAACCCCGAAGACGATACCCTCTTTCTTAGAGTTCAGACTGCCGATAAAGATGGCTCGCTTAGAAACATATACTTCCCTTTCGACATAGTTAATGACACAGCATTAGATGTGGCAATGGAGATGGTGAAAGAATTGGAGATCTCTGATTGGGAGCCGTTTGAAATTGCGGACATGATTGAAGGTGAGATATCGGCTCTGGTTCCAAACTGGAATAGAAGTGAGTTAACCAACCATAGCCTCGGCTTCAGCTGTGCAGAAGAAGATGATAATGTATCTCATCATACTTTCCGCTCGATCTCCTCGTCGTCCCAAGCAACAACTTTGGGTCTTATCTCCTCCCCAAGAACAAACCAAAACATTTCAAATGGTTTTAGTTGGTTCCCAGATGATACGCTTGATGATAGCAGTTCACAATGCTCATCAGCGTCGGGAAAATACTCCAACTTGAATTACATCAGCAGCGACGAGTATGAGACCAGCATGAGTTCAGTCCAGACAGATCAACATAACAACATCAATAAGATTCACAATTCCTCAAGATTTTGTCCTATTGAGAACCGCAAAAGCAAGGATTTTTTGGCTCAACTTCTATACAAGCAGAGCCAATGTGCGATAGCAGGGTCGTCTCAAGGAGTTGCCTCTGGTCGCAAAGACAAGAAAGGAACAGATGGTCGTAAATTAACTAGGAACAGATCACTAGTAGATGTACATAGCCAATTGCTGCATCGTTCGTTAGTGGAGGAAGTGAATAGAAGACGGTTATTCAAGACAGTTGGAGCAGTCGAAAGTATAGGCTTTCAAGCACCTTGTGAGGTTTCTTCGAGCAAAAGGGTCTCGAGTAGGCAACCGATTGGGAACCGAAGTAGTGATGTAGCAAGAACGAGGAGAAACGAGGATATTAGATGGCAAGATGTTGGAAGGAGAACATGA 1938 44.17 MFKNTRAGSPSSNLHDCKSEFGYVETDPTCRYGRFEEVLGKGAMKTVYKAIDEFLGIEVAWSQVKLNEVLRSPEDLQRLYSEVHLLSTLKHESIMRFYTSWIDVDKKTFNFITELFTSGTLREYGKKYRRVDIRAIKSWARQILQGLIYLHEHDPPIIHRDLKCDNIFVNGHLGQVKIGDLGLAAILHGSRSAHSVIGTPEFMAPELYEENYNELVDVYSFGMCVLEMLTSEYPYSECSNPAQIYKKVTSGKLPAALYKIQDVDAQRFIKKCLVPVSMRASAKELLADSFLKVDGNRPSSVGRTQNQKPFLNAKEMENFHLSEGLSRTNMTITGKLNPEDDTLFLRVQTADKDGSLRNIYFPFDIVNDTALDVAMEMVKELEISDWEPFEIADMIEGEISALVPNWNRSELTNHSLGFSCAEEDDNVSHHTFRSISSSSQATTLGLISSPRTNQNISNGFSWFPDDTLDDSSSQCSSASGKYSNLNYISSDEYETSMSSVQTDQHNNINKIHNSSRFCPIENRKSKDFLAQLLYKQSQCAIAGSSQGVASGRKDKKGTDGRKLTRNRSLVDVHSQLLHRSLVEEVNRRRLFKTVGAVESIGFQAPCEVSSSKRVSSRQPIGNRSSDVARTRRNEDIRWQDVGRRT* 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13870760 13874092 - CsaV3_6G019100.1 Csa06g01613 533240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01613 645 SMART serkin_6 33 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01613 645 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK4-RELATED 13 626 - -
Csa06g01613 645 Gene3D Transferase(Phosphotransferase) domain 1 116 296 - -
Csa06g01613 645 Gene3D Phosphorylase Kinase; domain 1 17 114 - -
Csa06g01613 645 MobiDBLite consensus disorder prediction 611 631 - -
Csa06g01613 645 MobiDBLite consensus disorder prediction 611 626 - -
Csa06g01613 645 Pfam Protein kinase domain 36 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01613 645 CDD STKc_WNK 31 291 - -
Csa06g01613 645 ProSiteProfiles Protein kinase domain profile. 33 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01613 645 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 13 626 - -
Csa06g01613 645 MobiDBLite consensus disorder prediction 544 565 - -
Csa06g01613 645 SUPERFAMILY Protein kinase-like (PK-like) 35 292 IPR011009 -
Csa06g01613 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01684 Csa-Chr4:16267499 Csa06g01613 Csa-Chr6:13870760 0 dispersed
Csa06g01613 Csa-Chr6:13870760 Csa07g01167 Csa-Chr7:11442874 4.06E-165 dispersed
Csa06g01613 Csa-Chr6:13870760 Csa03g00442 Csa-Chr3:3747292 6.23E-114 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78367 PF00069 Pkinase 9.40E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01613 K08867 - csv:101203757 1263.83