Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01652 ATGGAAGAGTTCCTAGACAATATACCTCCCATGGATCTGATGCGTTCCGAGAAGATGACTTTTGTTCAGCTCATTATCCCTGTTGAGTCCGCTCATCGAGCCATTTCATATCTTGGCGAGCTTGGCATCCTTCAATTTAGAGATTTAAACGTGGACAAAAGTCCTTTCCAGAGAACCTTTGTTAACCAGGTAAAGCGATGTGCTGAGATGTCAAGGAAGCTAAGATTTTTCAAAGATCAAATCAGTAAAGCTGGTGTACTGGCATCTACACGCCCAATTCTTCAAGAACATATTGAACTAGAGGATTTAGAGATACGACTGGCTGATCACGAGCATGAGCTGATTGAAATGAACTCTAACAGCGAGAAACTTCGACAGTCATATAATGAACTATTAGAATTCAAGATGGTATTGCAAAAGGCAAGCGTCTTTCTGGTGTCCAGTAATAGCCATTCAGTTTCTGAAGAAAGGGAGTTGAATGAAAATGTTTTCTTGAATGATAGCTATGTTGAGGATGGATCATTACTTGAACGGGAAATGAGACCTGGACCATCCAACCAATCTGGTTTGAGATTTATTTGTGGAATTATTTGTAAATCCAAAGTTCTTAGATTTGAAAGGATGTTGTTCCGTGCGACAAGGGGAAACATGCTTTTCAATCAGGCACCAGCTGATGTACAGATCATGGATCCCATATCTACAGAAATGGTTGAGAAAACAGTATTTGTTGTGTTTTTCTCTGGGGAGCAGGCCAGAAACAAAGTTTTGAAGATCTGTGAGGCTTTTGGAGCAAATTGCTATCCTGTTCCTGAAGATATAACCAAACAGAGGCAGATAACTAGAGAAGTGTCATCCCGCCTCACGGAACTTGAGGCCACTTTAGATGCTGGGATCCGACACCGAAACGAGGCTCTTGCATCAATAGGGTTTCACTTGATTAAATGGATGAATATGGTAAGAAGGGAAAAGGCTGTATATGATACGTTAAACATGTTGAATTTTGATGTCACTAAAAAATGTCTTGTTGGAGAAGGATGGTGCCCAATCTTTGCAAAAACTCAGATTCAAGAGGCACTACAGCGAGCAACATTTGATAGTAGTTCACAAGTGGGGATAATATTTCATGTGATGGATACGGTTGAATCCCCTCCTACACATTTTAGAACAAACCGTTTGACAAATGCTTTTCAAGAAATTGTTGACGCCTATGGTGTTGCTAGATATCAAGAAGCAAATCCTGCAGTTTACACTGTTATTACATTTCCATTCCTATTCGCAGTGATGTTTGGGGATTGGGGTCATGGAATATGCTTGTTGCTTGGAGCTTTAGTTCTTATAGCTCGTGAAAGTAAGCTCAATAATCAGAAATTAGGAAGCTTTATGGAGATGCTATTTGGTGGCCGCTACGTCCTTCTTTTGATGTCCCTATTTTCAATTTATTGTGGGTTAATCTACAATGAGTTCTTCTCTGTTCCATATCATATATTTGGTGCATCTGCTTACAAGTGTCGAGATAATTCATGCAGTGATGCCCACACTGTTGGCTTAGTTAAATACCGTGATCCGTATCCATTCGGTGTTGACCCAAGCTGGCGTGGAAGTCGTTCAGAACTTCCTTTTCTGAACTCTCTTAAAATGAAGATGTCTATCTTGTTGGGTATAGCTCAAATGAACTTAGGGATCATATTGAGTTATTTTAATGCCCGTTTTACTGGAAGCTCAATCGATATCAGGTACCAGTTTATACCACAAGTGATCTTCCTTAACAGCCTTTTTGGATATCTTTCTCTTCTCATTGTCATCAAGTGGTGCACCGGATCTCAAGCAGACCTCTATCATGTGATGATTTACATGTTTTTAAGCCCATTTGAGGATCTTGGTGAGAACGAATTGTTTTGGGGCCAAAGACCTCTTCAAATTATATTGTTGATGTTGGCTATAGTTGCAGTGCCTTGGATGCTTTTTCCTAAACCCTTTATTTTGAAAAAGATGCACACAGAGAGATTTCAAGGCCGTACTTATGGAATGCTTGGAACCTCTGAGATTGATCTTGAGGTGGAACCTGATTCAGCAAGGCAACACCAAGAGGACTTCAATTTTAGTGAGATTTTTGTTCACCAAATGATTCACTCCATAGAATTCGTCTTGGGTGCAGTTTCAAATACAGCATCCTATCTCCGACTTTGGGCTTTAAGCTTGGCGCACTCAGAACTGTCAACAGTTTTCTATGAGAAAGTACTACTCTTAGCTTGGGGGTATGACAGCTTTGTCATTCGGCTGATTGGTTTAGCTGTTTTTTCGTTTGCAACTGCTTTCATACTTCTTATGATGGAGACCCTTAGTGCCTTCCTTCATGCTTTGCGTCTTCATTGGGTTGAGTTTCAAAATAAGTTCTACCATGGTGATGGCCACAAGTTCAAACCTTTTTCCTTTGCTTCCATCGATGAGGACGAAGATTAA 2460 40.33 MEEFLDNIPPMDLMRSEKMTFVQLIIPVESAHRAISYLGELGILQFRDLNVDKSPFQRTFVNQVKRCAEMSRKLRFFKDQISKAGVLASTRPILQEHIELEDLEIRLADHEHELIEMNSNSEKLRQSYNELLEFKMVLQKASVFLVSSNSHSVSEERELNENVFLNDSYVEDGSLLEREMRPGPSNQSGLRFICGIICKSKVLRFERMLFRATRGNMLFNQAPADVQIMDPISTEMVEKTVFVVFFSGEQARNKVLKICEAFGANCYPVPEDITKQRQITREVSSRLTELEATLDAGIRHRNEALASIGFHLIKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKTQIQEALQRATFDSSSQVGIIFHVMDTVESPPTHFRTNRLTNAFQEIVDAYGVARYQEANPAVYTVITFPFLFAVMFGDWGHGICLLLGALVLIARESKLNNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGASAYKCRDNSCSDAHTVGLVKYRDPYPFGVDPSWRGSRSELPFLNSLKMKMSILLGIAQMNLGIILSYFNARFTGSSIDIRYQFIPQVIFLNSLFGYLSLLIVIKWCTGSQADLYHVMIYMFLSPFEDLGENELFWGQRPLQIILLMLAIVAVPWMLFPKPFILKKMHTERFQGRTYGMLGTSEIDLEVEPDSARQHQEDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDSFVIRLIGLAVFSFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGHKFKPFSFASIDEDED* 820
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 14511145 14521773 - CsaV3_6G021470.1 Csa06g01652 533279

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01652 819 Pfam V-type ATPase 116kDa subunit family 37 811 IPR002490 GO:0033179|GO:0046961|GO:1902600
Csa06g01652 819 PANTHER VACUOLAR PROTON ATPASE A1 5 819 - -
Csa06g01652 819 PANTHER VACUOLAR PROTON ATPASES 5 819 IPR002490 GO:0033179|GO:0046961|GO:1902600
Csa06g01652 819 Coils Coil 93 127 - -
Csa06g01652 819 PIRSF ATP6V0A1 9 819 IPR026028 GO:0000220|GO:0046961
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01652 K02154 ATPeV0A, ATP6N; V-type H+-transporting ATPase subunit a - csv:101216514 1636.31
       

Dupl-types


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02102 Csa-Chr2:19116549 Csa06g01652 Csa-Chr6:14511145 0 dispersed
Csa06g01652 Csa-Chr6:14511145 Csa07g00020 Csa-Chr7:346023 0 transposed
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g01881 . 1 998 Primary Pumps ATPases(2) AT1G10130 82.5 0.0e+00 1619.0
Csa06g01652 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.5 0.0e+00 1343.2
Csa02g02102 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.3 1.0e-295 1012.7
Csa07g00020 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.4 1.4e-295 1012.3
Csa07g00020 . 6 819 Primary Pumps ATPases(2) AT2G21410 75.6 0.0e+00 1229.9
Csa02g02102 . 1 809 Primary Pumps ATPases(2) AT2G21410 73.9 0.0e+00 1204.9
Csa06g01652 . 9 820 Primary Pumps ATPases(2) AT2G21410 62.1 6.6e-298 1020.0
Csa07g00020 . 8 819 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1235.3
Csa02g02102 . 1 809 Primary Pumps ATPases(2) AT4G39080 74.7 0.0e+00 1199.9
Csa06g01652 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.5 5.6e-297 1016.9
Csa03g01099 . 28 166 Primary Pumps ATPases(2) AT4G34720 100.0 4.5e-61 230.7
Csa02g02112 . 28 166 Primary Pumps ATPases(2) AT4G34720 99.3 1.0e-60 229.6
Csa02g02113 . 28 166 Primary Pumps ATPases(2) AT4G34720 99.3 1.0e-60 229.6
Csa03g01099 . 2 166 Primary Pumps ATPases(2) AT1G75630 81.4 2.7e-67 251.9
Csa02g02112 . 2 166 Primary Pumps ATPases(2) AT1G75630 80.9 5.9e-67 250.8
Csa02g02113 . 2 166 Primary Pumps ATPases(2) AT1G75630 80.9 5.9e-67 250.8
Csa03g01099 . 3 166 Primary Pumps ATPases(2) AT2G16510 99.4 5.4e-74 273.9
Csa02g02112 . 3 166 Primary Pumps ATPases(2) AT2G16510 98.8 9.2e-74 273.1
Csa02g02113 . 3 166 Primary Pumps ATPases(2) AT2G16510 98.8 1.2e-73 272.7
Csa02g02112 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 3.3e-52 201.1
Csa02g02113 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 4.3e-52 200.7
Csa03g01099 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 4.3e-52 200.7
Csa03g04355 . 1 175 Primary Pumps ATPases(2) AT2G25610 84.0 2.6e-71 265.4
Csa02g02355 . 6 180 Primary Pumps ATPases(2) AT2G25610 85.1 3.8e-70 261.5
Csa03g01099 . 28 166 Primary Pumps ATPases(2) AT4G38920 100.0 1.3e-60 229.2
Csa02g02112 . 28 166 Primary Pumps ATPases(2) AT4G38920 99.3 2.8e-60 228.0
Csa02g02113 . 28 166 Primary Pumps ATPases(2) AT4G38920 99.3 2.8e-60 228.0
Csa03g04355 . 6 175 Primary Pumps ATPases(2) AT4G32530 77.5 2.0e-73 272.3
Csa02g02355 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.8 1.4e-71 266.2
Csa01g02374 . 1 1066 Primary Pumps ATPases(2) AT1G07810 80.3 0.0e+00 1665.6
Csa01g02374 . 1 1066 Primary Pumps ATPases(2) AT1G07670 80.2 0.0e+00 1667.5
Csa02g01881 . 1 998 Primary Pumps ATPases(2) AT1G10130 82.5 0.0e+00 1619.0
Csa01g02374 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.4 0.0e+00 1312.0
Csa01g03136 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 1.2e-57 219.2
Csa07g00121 . 6 489 Primary Pumps ATPases(2) AT1G76030 96.3 1.4e-268 921.8
Csa05g01396 . 1 377 Primary Pumps ATPases(2) AT1G12840 83.0 1.8e-181 632.1
Csa06g02409 . 617 878 Primary Pumps ATPases(2) AT3G58730 82.1 1.6e-117 419.1
Csa03g03694 . 3 455 Primary Pumps ATPases(2) AT3G42050 79.7 3.4e-208 721.1
Csa03g01099 . 3 166 Primary Pumps ATPases(2) AT2G16510 99.4 5.4e-74 273.9
Csa02g02112 . 3 166 Primary Pumps ATPases(2) AT2G16510 98.8 9.2e-74 273.1
Csa02g02113 . 3 166 Primary Pumps ATPases(2) AT2G16510 98.8 1.2e-73 272.7
Csa07g00121 . 1 489 Primary Pumps ATPases(2) AT4G38510 95.5 2.3e-269 924.5
Csa03g02469 . 1 184 Primary Pumps ATPases(2) AT1G64200 73.3 1.8e-65 245.7
Csa07g00121 . 9 489 Primary Pumps ATPases(2) AT1G20260 96.1 3.0e-266 914.1
Csa06g01652 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.5 0.0e+00 1343.2
Csa02g02102 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.3 1.0e-295 1012.7
Csa07g00020 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.4 1.4e-295 1012.3
Csa03g03857 . 1 352 Primary Pumps ATPases(2) AT3G28715 92.0 4.5e-192 667.2
Csa03g02469 . 1 230 Primary Pumps ATPases(2) AT4G11150 76.6 5.7e-90 327.4
Csa07g02282 . 1 624 Primary Pumps ATPases(2) AT1G78900 92.6 0.0e+00 1166.4
Csa07g00121 . 6 489 Primary Pumps ATPases(2) AT1G76030 96.3 1.4e-268 921.8
Csa07g00121 . 1 489 Primary Pumps ATPases(2) AT4G38510 95.5 2.3e-269 924.5
Csa07g00121 . 9 489 Primary Pumps ATPases(2) AT1G20260 96.1 3.0e-266 914.1
Csa05g01396 . 1 377 Primary Pumps ATPases(2) AT1G12840 83.0 1.8e-181 632.1
Csa06g02409 . 617 878 Primary Pumps ATPases(2) AT3G58730 82.1 1.6e-117 419.1
Csa03g02469 . 1 230 Primary Pumps ATPases(2) AT4G11150 76.6 5.7e-90 327.4
Csa03g02469 . 1 223 Primary Pumps ATPases(2) AT3G08560 68.6 1.1e-75 280.0
Csa03g02469 . 1 184 Primary Pumps ATPases(2) AT1G64200 73.3 1.8e-65 245.7
Csa01g03136 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 1.2e-57 219.2
Csa03g03694 . 3 455 Primary Pumps ATPases(2) AT3G42050 79.7 3.4e-208 721.1
Csa06g01652 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.5 0.0e+00 1343.2
Csa02g02102 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.3 1.0e-295 1012.7
Csa07g00020 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.4 1.4e-295 1012.3
Csa07g00020 . 6 819 Primary Pumps ATPases(2) AT2G21410 75.6 0.0e+00 1229.9
Csa02g02102 . 1 809 Primary Pumps ATPases(2) AT2G21410 73.9 0.0e+00 1204.9
Csa06g01652 . 9 820 Primary Pumps ATPases(2) AT2G21410 62.1 6.6e-298 1020.0
Csa07g00020 . 8 819 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1235.3
Csa02g02102 . 1 809 Primary Pumps ATPases(2) AT4G39080 74.7 0.0e+00 1199.9
Csa06g01652 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.5 5.6e-297 1016.9
Csa03g01099 . 28 166 Primary Pumps ATPases(2) AT4G34720 100.0 4.5e-61 230.7
Csa02g02112 . 28 166 Primary Pumps ATPases(2) AT4G34720 99.3 1.0e-60 229.6
Csa02g02113 . 28 166 Primary Pumps ATPases(2) AT4G34720 99.3 1.0e-60 229.6
Csa02g02112 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 3.3e-52 201.1
Csa02g02113 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 4.3e-52 200.7
Csa03g01099 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 4.3e-52 200.7
Csa03g01099 . 28 166 Primary Pumps ATPases(2) AT4G38920 100.0 1.3e-60 229.2
Csa02g02112 . 28 166 Primary Pumps ATPases(2) AT4G38920 99.3 2.8e-60 228.0
Csa02g02113 . 28 166 Primary Pumps ATPases(2) AT4G38920 99.3 2.8e-60 228.0
Csa03g01099 . 2 166 Primary Pumps ATPases(2) AT1G75630 81.4 2.7e-67 251.9
Csa02g02112 . 2 166 Primary Pumps ATPases(2) AT1G75630 80.9 5.9e-67 250.8
Csa02g02113 . 2 166 Primary Pumps ATPases(2) AT1G75630 80.9 5.9e-67 250.8
Csa03g01099 . 3 166 Primary Pumps ATPases(2) AT2G16510 99.4 5.4e-74 273.9
Csa02g02112 . 3 166 Primary Pumps ATPases(2) AT2G16510 98.8 9.2e-74 273.1
Csa02g02113 . 3 166 Primary Pumps ATPases(2) AT2G16510 98.8 1.2e-73 272.7
Csa03g04355 . 6 175 Primary Pumps ATPases(2) AT4G32530 77.5 2.0e-73 272.3
Csa02g02355 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.8 1.4e-71 266.2
Csa03g04355 . 1 175 Primary Pumps ATPases(2) AT2G25610 84.0 2.6e-71 265.4
Csa02g02355 . 6 180 Primary Pumps ATPases(2) AT2G25610 85.1 3.8e-70 261.5
Csa03g03857 . 1 352 Primary Pumps ATPases(2) AT3G28710 94.3 3.9e-199 690.6
Csa03g03857 . 1 352 Primary Pumps ATPases(2) AT3G28715 92.0 4.5e-192 667.2
Csa01g02374 . 1 1066 Primary Pumps ATPases(2) AT1G07810 80.3 0.0e+00 1665.6
Csa01g02374 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.4 0.0e+00 1312.0
Csa02g01881 . 1 998 Primary Pumps ATPases(2) AT1G10130 82.5 0.0e+00 1619.0
Csa01g02374 . 1 1066 Primary Pumps ATPases(2) AT1G07670 80.2 0.0e+00 1667.5
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000455 4 5 5 3 4 3 5 3 3 3 3 3 6 3 3 5 3 6 6 3 3 3 3 3 3 3 3 7 4 4 115
       

Transcriptome


Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g01652 Csa_Chr06 FPKM 36.881298 39.765251 69.785042 66.243507 19.350029 25.675398 21.271742 147.801605 172.435455 144.663864