Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01652 ATGGAAGAGTTCCTAGACAATATACCTCCCATGGATCTGATGCGTTCCGAGAAGATGACTTTTGTTCAGCTCATTATCCCTGTTGAGTCCGCTCATCGAGCCATTTCATATCTTGGCGAGCTTGGCATCCTTCAATTTAGAGATTTAAACGTGGACAAAAGTCCTTTCCAGAGAACCTTTGTTAACCAGGTAAAGCGATGTGCTGAGATGTCAAGGAAGCTAAGATTTTTCAAAGATCAAATCAGTAAAGCTGGTGTACTGGCATCTACACGCCCAATTCTTCAAGAACATATTGAACTAGAGGATTTAGAGATACGACTGGCTGATCACGAGCATGAGCTGATTGAAATGAACTCTAACAGCGAGAAACTTCGACAGTCATATAATGAACTATTAGAATTCAAGATGGTATTGCAAAAGGCAAGCGTCTTTCTGGTGTCCAGTAATAGCCATTCAGTTTCTGAAGAAAGGGAGTTGAATGAAAATGTTTTCTTGAATGATAGCTATGTTGAGGATGGATCATTACTTGAACGGGAAATGAGACCTGGACCATCCAACCAATCTGGTTTGAGATTTATTTGTGGAATTATTTGTAAATCCAAAGTTCTTAGATTTGAAAGGATGTTGTTCCGTGCGACAAGGGGAAACATGCTTTTCAATCAGGCACCAGCTGATGTACAGATCATGGATCCCATATCTACAGAAATGGTTGAGAAAACAGTATTTGTTGTGTTTTTCTCTGGGGAGCAGGCCAGAAACAAAGTTTTGAAGATCTGTGAGGCTTTTGGAGCAAATTGCTATCCTGTTCCTGAAGATATAACCAAACAGAGGCAGATAACTAGAGAAGTGTCATCCCGCCTCACGGAACTTGAGGCCACTTTAGATGCTGGGATCCGACACCGAAACGAGGCTCTTGCATCAATAGGGTTTCACTTGATTAAATGGATGAATATGGTAAGAAGGGAAAAGGCTGTATATGATACGTTAAACATGTTGAATTTTGATGTCACTAAAAAATGTCTTGTTGGAGAAGGATGGTGCCCAATCTTTGCAAAAACTCAGATTCAAGAGGCACTACAGCGAGCAACATTTGATAGTAGTTCACAAGTGGGGATAATATTTCATGTGATGGATACGGTTGAATCCCCTCCTACACATTTTAGAACAAACCGTTTGACAAATGCTTTTCAAGAAATTGTTGACGCCTATGGTGTTGCTAGATATCAAGAAGCAAATCCTGCAGTTTACACTGTTATTACATTTCCATTCCTATTCGCAGTGATGTTTGGGGATTGGGGTCATGGAATATGCTTGTTGCTTGGAGCTTTAGTTCTTATAGCTCGTGAAAGTAAGCTCAATAATCAGAAATTAGGAAGCTTTATGGAGATGCTATTTGGTGGCCGCTACGTCCTTCTTTTGATGTCCCTATTTTCAATTTATTGTGGGTTAATCTACAATGAGTTCTTCTCTGTTCCATATCATATATTTGGTGCATCTGCTTACAAGTGTCGAGATAATTCATGCAGTGATGCCCACACTGTTGGCTTAGTTAAATACCGTGATCCGTATCCATTCGGTGTTGACCCAAGCTGGCGTGGAAGTCGTTCAGAACTTCCTTTTCTGAACTCTCTTAAAATGAAGATGTCTATCTTGTTGGGTATAGCTCAAATGAACTTAGGGATCATATTGAGTTATTTTAATGCCCGTTTTACTGGAAGCTCAATCGATATCAGGTACCAGTTTATACCACAAGTGATCTTCCTTAACAGCCTTTTTGGATATCTTTCTCTTCTCATTGTCATCAAGTGGTGCACCGGATCTCAAGCAGACCTCTATCATGTGATGATTTACATGTTTTTAAGCCCATTTGAGGATCTTGGTGAGAACGAATTGTTTTGGGGCCAAAGACCTCTTCAAATTATATTGTTGATGTTGGCTATAGTTGCAGTGCCTTGGATGCTTTTTCCTAAACCCTTTATTTTGAAAAAGATGCACACAGAGAGATTTCAAGGCCGTACTTATGGAATGCTTGGAACCTCTGAGATTGATCTTGAGGTGGAACCTGATTCAGCAAGGCAACACCAAGAGGACTTCAATTTTAGTGAGATTTTTGTTCACCAAATGATTCACTCCATAGAATTCGTCTTGGGTGCAGTTTCAAATACAGCATCCTATCTCCGACTTTGGGCTTTAAGCTTGGCGCACTCAGAACTGTCAACAGTTTTCTATGAGAAAGTACTACTCTTAGCTTGGGGGTATGACAGCTTTGTCATTCGGCTGATTGGTTTAGCTGTTTTTTCGTTTGCAACTGCTTTCATACTTCTTATGATGGAGACCCTTAGTGCCTTCCTTCATGCTTTGCGTCTTCATTGGGTTGAGTTTCAAAATAAGTTCTACCATGGTGATGGCCACAAGTTCAAACCTTTTTCCTTTGCTTCCATCGATGAGGACGAAGATTAA 2460 40.33 MEEFLDNIPPMDLMRSEKMTFVQLIIPVESAHRAISYLGELGILQFRDLNVDKSPFQRTFVNQVKRCAEMSRKLRFFKDQISKAGVLASTRPILQEHIELEDLEIRLADHEHELIEMNSNSEKLRQSYNELLEFKMVLQKASVFLVSSNSHSVSEERELNENVFLNDSYVEDGSLLEREMRPGPSNQSGLRFICGIICKSKVLRFERMLFRATRGNMLFNQAPADVQIMDPISTEMVEKTVFVVFFSGEQARNKVLKICEAFGANCYPVPEDITKQRQITREVSSRLTELEATLDAGIRHRNEALASIGFHLIKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKTQIQEALQRATFDSSSQVGIIFHVMDTVESPPTHFRTNRLTNAFQEIVDAYGVARYQEANPAVYTVITFPFLFAVMFGDWGHGICLLLGALVLIARESKLNNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGASAYKCRDNSCSDAHTVGLVKYRDPYPFGVDPSWRGSRSELPFLNSLKMKMSILLGIAQMNLGIILSYFNARFTGSSIDIRYQFIPQVIFLNSLFGYLSLLIVIKWCTGSQADLYHVMIYMFLSPFEDLGENELFWGQRPLQIILLMLAIVAVPWMLFPKPFILKKMHTERFQGRTYGMLGTSEIDLEVEPDSARQHQEDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDSFVIRLIGLAVFSFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGHKFKPFSFASIDEDED* 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14511145 14521773 - CsaV3_6G021470.1 Csa06g01652 533279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01652 819 Pfam V-type ATPase 116kDa subunit family 37 811 IPR002490 GO:0033179|GO:0046961|GO:1902600
Csa06g01652 819 PANTHER VACUOLAR PROTON ATPASE A1 5 819 - -
Csa06g01652 819 PANTHER VACUOLAR PROTON ATPASES 5 819 IPR002490 GO:0033179|GO:0046961|GO:1902600
Csa06g01652 819 Coils Coil 93 127 - -
Csa06g01652 819 PIRSF ATP6V0A1 9 819 IPR026028 GO:0000220|GO:0046961
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02102 Csa-Chr2:19116549 Csa06g01652 Csa-Chr6:14511145 0 dispersed
Csa06g01652 Csa-Chr6:14511145 Csa07g00020 Csa-Chr7:346023 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01652 K02154 - csv:101216514 1636.31