Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01663 ATGGAAGGAAGTGACACAATCACAGTCACCACCGTTTCTTCAACTCCACTTTCTCAATCTCCTTCTTCTTCTTCTTCTCCGGCACCACCCCCGCCCGTTATTCTCAGTCCATGTGCGGCCTGCAAGATTTTGCGACGGCGATGTGCCGAGCGATGTGTATTGGCCCCCTATTTCCCTCCCTCTGAACCGGCGAAGTTTGCCATCGCTCATCGAGTTTTTGGCGCCAGTAATATCATCAAATTCCTGCAGGAATTGCCTGAATCTCAAAGGGCAGATGCAGTGAGCAGCTTGGTTTATGAAGCAAGTGCAAGGGTTAGAGACCCTGTTTATGGGTCAGCAGGGGCCATTTGCCAACTCCAAAAGCAAGTCAATGAGCTTCAAGCCCAACTAGCCAAAGCTCAGGCAGAGGTTGTCAACATGCAATGCCAACAAGCCAATCTTGTGGCCTTTGTTTGCAGGGAATTGGCTCAATCTCATCAATCTTTTGATGAATTCAATGGCAGCCCACAATCACATAATGGATTATTACAGAGCATACATCCTCCAAGTTACTTTGATGATAGCAATAACGTAAACTCATTGTGGGAACCTCTTTGGACATGA 603 47.43 MEGSDTITVTTVSSTPLSQSPSSSSSPAPPPPVILSPCAACKILRRRCAERCVLAPYFPPSEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARVRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSFDEFNGSPQSHNGLLQSIHPPSYFDDSNNVNSLWEPLWT* 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14608411 14611037 + CsaV3_6G021580.1 Csa06g01663 533290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01663 200 MobiDBLite consensus disorder prediction 1 30 - -
Csa06g01663 200 ProSiteProfiles LOB domain profile. 36 137 IPR004883 -
Csa06g01663 200 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1-LIKE 12 197 - -
Csa06g01663 200 Pfam Lateral organ boundaries (LOB) domain 37 134 IPR004883 -
Csa06g01663 200 MobiDBLite consensus disorder prediction 1 22 - -
Csa06g01663 200 Coils Coil 116 143 - -
Csa06g01663 200 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 197 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01304 Csa-Chr1:8384569 Csa06g01663 Csa-Chr6:14608411 8.86E-67 dispersed
Csa01g01305 Csa-Chr1:8399408 Csa06g01663 Csa-Chr6:14608411 7.58E-80 dispersed
Csa05g01777 Csa-Chr5:21124562 Csa06g01663 Csa-Chr6:14608411 7.43E-57 dispersed
Csa06g01395 Csa-Chr6:11927402 Csa06g01663 Csa-Chr6:14608411 4.37E-48 dispersed
Csa06g01663 Csa-Chr6:14608411 Csa05g00883 Csa-Chr5:6752730 4.69E-43 dispersed
Csa06g03011 Csa-Chr6:25950641 Csa06g01663 Csa-Chr6:14608411 3.65E-11 dispersed
Csa05g00625 Csa-Chr5:4131728 Csa06g01663 Csa-Chr6:14608411 6.71E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32027 PF03195 LOB 4.50E-41 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01663 - - csv:101215067 342.043