Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g01663 | ATGGAAGGAAGTGACACAATCACAGTCACCACCGTTTCTTCAACTCCACTTTCTCAATCTCCTTCTTCTTCTTCTTCTCCGGCACCACCCCCGCCCGTTATTCTCAGTCCATGTGCGGCCTGCAAGATTTTGCGACGGCGATGTGCCGAGCGATGTGTATTGGCCCCCTATTTCCCTCCCTCTGAACCGGCGAAGTTTGCCATCGCTCATCGAGTTTTTGGCGCCAGTAATATCATCAAATTCCTGCAGGAATTGCCTGAATCTCAAAGGGCAGATGCAGTGAGCAGCTTGGTTTATGAAGCAAGTGCAAGGGTTAGAGACCCTGTTTATGGGTCAGCAGGGGCCATTTGCCAACTCCAAAAGCAAGTCAATGAGCTTCAAGCCCAACTAGCCAAAGCTCAGGCAGAGGTTGTCAACATGCAATGCCAACAAGCCAATCTTGTGGCCTTTGTTTGCAGGGAATTGGCTCAATCTCATCAATCTTTTGATGAATTCAATGGCAGCCCACAATCACATAATGGATTATTACAGAGCATACATCCTCCAAGTTACTTTGATGATAGCAATAACGTAAACTCATTGTGGGAACCTCTTTGGACATGA | 603 | 47.43 | MEGSDTITVTTVSSTPLSQSPSSSSSPAPPPPVILSPCAACKILRRRCAERCVLAPYFPPSEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARVRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSFDEFNGSPQSHNGLLQSIHPPSYFDDSNNVNSLWEPLWT* | 201 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 14608411 | 14611037 | + | CsaV3_6G021580.1 | Csa06g01663 | 533290 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g01663 | 200 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Csa06g01663 | 200 | ProSiteProfiles | LOB domain profile. | 36 | 137 | IPR004883 | - | |
Csa06g01663 | 200 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 1-LIKE | 12 | 197 | - | - | |
Csa06g01663 | 200 | Pfam | Lateral organ boundaries (LOB) domain | 37 | 134 | IPR004883 | - | |
Csa06g01663 | 200 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Csa06g01663 | 200 | Coils | Coil | 116 | 143 | - | - | |
Csa06g01663 | 200 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 12 | 197 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g01304 | Csa-Chr1:8384569 | Csa06g01663 | Csa-Chr6:14608411 | 8.86E-67 | dispersed | |
Csa01g01305 | Csa-Chr1:8399408 | Csa06g01663 | Csa-Chr6:14608411 | 7.58E-80 | dispersed | |
Csa05g01777 | Csa-Chr5:21124562 | Csa06g01663 | Csa-Chr6:14608411 | 7.43E-57 | dispersed | |
Csa06g01395 | Csa-Chr6:11927402 | Csa06g01663 | Csa-Chr6:14608411 | 4.37E-48 | dispersed | |
Csa06g01663 | Csa-Chr6:14608411 | Csa05g00883 | Csa-Chr5:6752730 | 4.69E-43 | dispersed | |
Csa06g03011 | Csa-Chr6:25950641 | Csa06g01663 | Csa-Chr6:14608411 | 3.65E-11 | dispersed | |
Csa05g00625 | Csa-Chr5:4131728 | Csa06g01663 | Csa-Chr6:14608411 | 6.71E-77 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32027 | PF03195 | LOB | 4.50E-41 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g01663 | - | - | csv:101215067 | 342.043 |