Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01672 ATGGGGAAAGAGAAGACTCACATTAACATTGTGGTCATTGGCCATGTCGACTCTGGGAAATCTACCACCACCGGGCATTTAATCTATAAGCTTGGTGGTATTGACAAGCGTGTCATTGAAAGGTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCCTTCAAGTATGCTTGGGTGTTGGACAAGCTTAAGGCTGAACGTGAACGTGGTATTACCATTGATATTGCTTTGTGGAAGTTTGAAACCACCAAATACTACTGCACCGTTATTGATGCTCCTGGACATCGTGACTTCATTAAGAACATGATTACTGGTACCTCACAAGCTGATTGTGCTGTTCTCATTATTGATTCCACTACTGGTGGTTTTGAAGCTGGTATTTCTAAGGATGGTCAAACACGTGAGCATGCTTTGCTCGCGTTTACTCTCGGTGTCAAGCAGATGATTTGCTGCTGCAACAAGATGGATGCCACCACCCCCAAGTACTCCAAGGCAAGGTATGATGAAATTGTCAAGGAAGTTTCTTCCTACCTCAAAAAGGTCGGATACAACCCTGACAAAATCCCCTTTGTTCCCATCTCTGGTTTTGAAGGAGACAACATGATTGAGAGGTCGACCAACCTTGACTGGTACAAGGGTCCAACTCTCCTTGAGGCTCTTGACTTGATCCAGGAGCCCAAGAGGCCCTCAGACAAGCCACTCCGTCTTCCACTTCAGGATGTGTACAAGATCGGTGGTATTGGAACTGTACCAGTTGGTCGTGTTGAGACTGGTGTCCTCAAACCTGGAATGGTGGTCACTTTTGGCCCTTCTGGATTGACCACTGAAGTCAAGTCTGTTGAGATGCACCACGAATCTCTACCCGAGGCCGTTCCTGGTGACAATGTGGGATTCAATGTGAAGAATGTTGCTGTAAAGGATCTCAAGCGTGGTTTCGTCGCTTCCAACTCAAAGGATGACCCTGCCAGGGAGGCTGCCAACTTCACTTCTCAAGTCATTATCATGAACCACCCTGGACAAATTGGCAATGGTTATGCTCCAGTGCTTGATTGCCACACCTCTCATATTGCGGTGAAATTTGCCGAGATTCTAACCAAAATCGACAGGCGATCAGGTAAGGAACTTGAGAAGGAACCCAAGTTCTTAAAGAATGGTGATGCAGGTATGATTAAGATGATTCCCACCAAACCTATGGTGGTGGAAACCTTCTCTCAGTACCCTCCTCTTGGACGTTTCGCCGTAAGAGACATGAGACAGACAGTTGCTGTTGGTGTCATCAAGTCCGTCGAAAAGAAGGATCCAAGTGGTGCTAAGGTTACTAAATCCGCAGCCAAGAAGGGTGGAAAGTGA 1350 46.59 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHESLPEAVPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMIKMIPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAAKKGGK* 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14653265 14655636 + CsaV3_6G021670.1 Csa06g01672 533299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01672 449 SUPERFAMILY Translation proteins 226 321 IPR009000 -
Csa06g01672 449 Hamap Elongation factor Tu [tuf]. 2 432 IPR004539 GO:0003746|GO:0005525|GO:0006414
Csa06g01672 449 Gene3D Translation factors 323 430 - -
Csa06g01672 449 Gene3D Translation factors 229 316 - -
Csa06g01672 449 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 429 IPR009001 -
Csa06g01672 449 CDD EF1_alpha_II 230 320 - -
Csa06g01672 449 Pfam Elongation factor Tu C-terminal domain 322 429 IPR004160 -
Csa06g01672 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Csa06g01672 449 PANTHER TRANSLATION FACTOR 1 447 - -
Csa06g01672 449 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924|GO:0005525
Csa06g01672 449 Pfam Elongation factor Tu GTP binding domain 5 221 IPR000795 GO:0003924|GO:0005525
Csa06g01672 449 Gene3D - 1 226 IPR027417 -
Csa06g01672 449 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Csa06g01672 449 CDD EF1_alpha_III 323 426 - -
Csa06g01672 449 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 1 447 - -
Csa06g01672 449 CDD EF1_alpha 9 227 - -
Csa06g01672 449 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525
Csa06g01672 449 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 433 IPR004539 GO:0003746|GO:0005525|GO:0006414
Csa06g01672 449 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Csa06g01672 449 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Csa06g01672 449 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Csa06g01672 449 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Csa06g01672 449 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00945 Csa-Chr2:8913778 Csa06g01672 Csa-Chr6:14653265 0 dispersed
Csa05g01773 Csa-Chr5:21091875 Csa06g01672 Csa-Chr6:14653265 0 dispersed
Csa05g01774 Csa-Chr5:21096530 Csa06g01672 Csa-Chr6:14653265 0 dispersed
Csa06g01672 Csa-Chr6:14653265 Csa07g01766 Csa-Chr7:18054132 3.38E-45 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01672 K03231 - csv:101213221 904.434