Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01677 ATGGAAATTGATCTGAACCAAACAGCCAGTGAGGTGGGGAAGAATGCATATTGCTATGGAAATTGTGAAGAGGGTCTTTGCAATTGTTGTTTATCCTCCTCAACTTCTTCTTGTTCCTCAAATTCATCGTCAACTCCCGTCTCTTCTTCAACCTATTTGGAGCTTTGGCATGCTTGTGCTGGTCCTCTCACCTCATTGCCCAAGAAAGGAAATGTAGTTGTCTATTTCCCACAAGGTCACTTGGAGCAAATTGCCTCGGCGTCTCCCTTTTCCCCCATGGAGATGCGCACTTTTGACCTTCAGCCACATATCCTCTGCAGGGTCATCAATGTTCACCTACTCGCCAATAAGGAGAATGATGAGGTCTATACGCAACTTACTCTCCGTCCCTTGCCAGAGTTATTAGGCACTGGTGTAGCGGGCAAAGAGCTGGAGGAGTTGGCGTTGAATGGAGCTGATGGAGATGGGAGCGGGGGGTCGCCTACTAGATCTACACCTCACATGTTCTGCAAAACACTTACAGCGTCTGACACCAGCACCCATGGAGGATTCTCTGTTCCTCGCAGAGCTGCTGAAGACTGTTTCCCTCCTCTGGATTACACTCAGCTTAGGCCGTCTCAAGAGCTAATAGCCAAGGACCTGCATGGCGTGGAGTGGAGATTTAGACATATTTACAGAGGTCAACCTAGGCGGCATCTGCTCACTACTGGATGGAGTATTTTTGTAAGCCAAAAGAATCTTATTTCTGGTGATGCAGTGCTCTTTTTAAGGGGTGAGAATGGAGAGTTAAGATTGGGAATAAGGCGAGCTGTTCGGCCTAGAAATGGTCTTCCTGATTCAATTGTTGGCAACCAAAATTCTTGTGCAAATGATCTTGCTCGTGTGGTGAAAGCAATATCCACCAAGAGCACATTTGATGTGTTTTATAATCCAAGGGCATATCATGCACAATTTATTATATCTTGTCAGAAGTATGTGAAGAGCATCAATAATCCAGTGAGTGTAGGCACAAGATTCAAAATGAGATTTGAGATGGATGATTCACCAGAAAGAAGGTTTAATGGTGTAGTTGTTGGAATTAGTGACATGGATTCCTTTAGATGGCCGAACTCAAAATGGAGATGCTTAACGGTCCGATGGGATAAAGACAGTGATCATCAAGAACGTGTGTCACCCTGGGAGATCGATCCTTCTGTTTCTCTTCCGCCTTTGAGTGTTCAGTCTTCTCCAAGGCTGAAGAAACTGAGGACTAGTCTGCAGGCAGCCCCGCCTAACAACGCCTTTACTGGGAGGGGCGGTTTTATGGACTTTGAGGATTCAGTTAGATCCTCTAAGGTCTTGCAAGGTCAAGAAAATGTAGGCTTTATGGAATCTGATAGATTTCTGAAGGTCTTGCAAGGTCAAGAAATATGCTCATTGAGGCCACCAACTAGTAAACCAGAATATAGTTTAGGTGTTTGGGGAAAGTTCAATCTTAGTGACAACTCTTTTAACACATTTCAATCACCAAACTCCAATTTTTATCACATGGCGTCTAACAGCGCCCAAAAGATGTATTTCCCTCGTAGTGAGATGCACAGTACTGGCCAAGCGGCCATGATGCTCTCAAATGATAGCAACTTTCCAAGAGAGAGTGCCTTGTTCAACCCATCTGCTGTTGGTGCTAATGTTATCAGGACTAAAATGGAAAGGACTAGTCGTTCTCTTGATCGGGAATCTCTACATCTGGCATCTGCTCCTCCAACTTTAGGGTCGAATATGCGGAATTCCAAGGATGAACATGTGAATGATAATGCAACTGGCTGTAAACTTTTTGGCTTTTCCTTGACTACGGAAACTGCTACAAACGTGCAAAGTTCAGGAAAGAGAAGTTGTACCAAAGTTCACAAACAAGGCAGCTTGGTGGGAAGAGCTATCGATCTCTCTAGGCTGAATGGCTATACTGATCTGATTTCTGAACTGGAGCGGCTGTTTAGCATGGAAGGTCTCTTAAAAGATCCCGATAAAGGATGGCGAGTTTTGTACACAGACAACGAGAACGATGTAATGGTTGTTGGGGATTATCCATGGCATGACTTCTGTGATGCGGTTTCGAAAATCCACATATACACTCAAGAAGAAGTGGAAAAGATGACAAATGGAGTGATCAGCGATGATACTCAAAGCTGCTTAGACCAGGCTCCTTTATGTATGGAAGCATCAAAATCCTCTTCAGTGGGCCAACCTGATTCTCCTCCAACGGCAGTAAGAGGTTAA 2256 44.59 MEIDLNQTASEVGKNAYCYGNCEEGLCNCCLSSSTSSCSSNSSSTPVSSSTYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQIASASPFSPMEMRTFDLQPHILCRVINVHLLANKENDEVYTQLTLRPLPELLGTGVAGKELEELALNGADGDGSGGSPTRSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYTQLRPSQELIAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLISGDAVLFLRGENGELRLGIRRAVRPRNGLPDSIVGNQNSCANDLARVVKAISTKSTFDVFYNPRAYHAQFIISCQKYVKSINNPVSVGTRFKMRFEMDDSPERRFNGVVVGISDMDSFRWPNSKWRCLTVRWDKDSDHQERVSPWEIDPSVSLPPLSVQSSPRLKKLRTSLQAAPPNNAFTGRGGFMDFEDSVRSSKVLQGQENVGFMESDRFLKVLQGQEICSLRPPTSKPEYSLGVWGKFNLSDNSFNTFQSPNSNFYHMASNSAQKMYFPRSEMHSTGQAAMMLSNDSNFPRESALFNPSAVGANVIRTKMERTSRSLDRESLHLASAPPTLGSNMRNSKDEHVNDNATGCKLFGFSLTTETATNVQSSGKRSCTKVHKQGSLVGRAIDLSRLNGYTDLISELERLFSMEGLLKDPDKGWRVLYTDNENDVMVVGDYPWHDFCDAVSKIHIYTQEEVEKMTNGVISDDTQSCLDQAPLCMEASKSSSVGQPDSPPTAVRG* 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14680434 14688972 - CsaV3_6G021720.1 Csa06g01677 533304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01677 751 ProSiteProfiles PB1 domain profile. 623 707 IPR000270 GO:0005515
Csa06g01677 751 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 457 IPR044835 GO:0003677|GO:0006355|GO:0009725
Csa06g01677 751 SUPERFAMILY CAD & PB1 domains 625 702 - -
Csa06g01677 751 CDD B3_DNA 167 269 IPR003340 GO:0003677
Csa06g01677 751 Pfam AUX/IAA family 671 708 IPR033389 -
Csa06g01677 751 Gene3D - 332 402 - -
Csa06g01677 751 SUPERFAMILY DNA-binding pseudobarrel domain 163 280 IPR015300 -
Csa06g01677 751 Pfam Auxin response factor 296 376 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Csa06g01677 751 ProSiteProfiles B3 DNA-binding domain profile. 169 271 IPR003340 GO:0003677
Csa06g01677 751 Pfam B3 DNA binding domain 169 270 IPR003340 GO:0003677
Csa06g01677 751 PANTHER AUXIN RESPONSE FACTOR 459 739 - -
Csa06g01677 751 Gene3D - 619 712 - -
Csa06g01677 751 PANTHER AUXIN RESPONSE FACTOR 17 457 - -
Csa06g01677 751 SMART B3_2 169 271 IPR003340 GO:0003677
Csa06g01677 751 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 459 739 IPR044835 GO:0003677|GO:0006355|GO:0009725
Csa06g01677 751 Gene3D - 167 271 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01677 Csa-Chr6:14680434 Csa06g03662 Csa-Chr6:29437655 9.09E-143 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32028 PF02309 AUX_IAA 7.10E-08 CL0072 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01677 - - csv:101212503 1463.36