Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01683 ATGACTGTAATCGACATCATCTTCCGAGTCGATTCCATTTGCAAGAAATACGACAAGTATGATGTCGAGAAACAGCGTGAGCTCAATGCTTATGGTGATGATGCCTTCGCTCGCCTCTTCGCCGCCGTCGAACTCGAAATCCACGCCGCTCTTCAGAAATCTGAGGTTGCTTCAACTGAGACGAATAGGGCTGCTGCTGTTGCGATGAACGCTGAGGTTCGACGGAAGAAGGCTCGATTGATGGATGAAGTCCCTAAGCTTCGTAAATTGGCTCACAAGAAGGTTAAAGGGGTTCCAAAAGAAGAGCTGGAGGTCAGAGATGATCTTGTTCTTGCACTAGAAGAGAAGATTAAAGCCATACCAGATGGGAATACCTCAGGAGCCAAACATTCTGGAGGATGGGGCTCCTCCTCCTCATCTAACAATATCAAGTTTGATTCATCATCAGATGGAAACTTCGAGAGCGAGTATTTCCAGCAAAGTGAAGAATCGAGTCAATTTCGAAATGAGTATGAAATGCGGAAGATGAAACAGGACCAAGGTCTTGATGTCATATCCGAAGGTTTGGACATGCTGAAAAATCTAGCTCATGATATGAACGAGGAATTGGACAGGCAAGTTCCGTTAATCGACGAGATCGACTCTAAGGTGGACAAGGTGACTGACGAGATTAAAAACACCAATGTTAGGCTCAAGGAAACACTCTATGAGGTGAGAAGTAGCCAAAACTTTTGCATTGATATCATTCTTCTCTGTGTAATTCTTGGAATTGCTTCTTACTTGTACAACATATTGAGTTGA 801 43.95 MTVIDIIFRVDSICKKYDKYDVEKQRELNAYGDDAFARLFAAVELEIHAALQKSEVASTETNRAAAVAMNAEVRRKKARLMDEVPKLRKLAHKKVKGVPKEELEVRDDLVLALEEKIKAIPDGNTSGAKHSGGWGSSSSSNNIKFDSSSDGNFESEYFQQSEESSQFRNEYEMRKMKQDQGLDVISEGLDMLKNLAHDMNEELDRQVPLIDEIDSKVDKVTDEIKNTNVRLKETLYEVRSSQNFCIDIILLCVILGIASYLYNILS* 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14745227 14748436 + CsaV3_6G021780.1 Csa06g01683 533310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01683 266 Coils Coil 210 230 - -
Csa06g01683 266 PANTHER SYNTAXIN 1 263 IPR045242 -
Csa06g01683 266 CDD SNARE_Qc 177 233 - -
Csa06g01683 266 SUPERFAMILY SNARE fusion complex 168 232 - -
Csa06g01683 266 Pfam SNARE domain 209 258 IPR000727 -
Csa06g01683 266 Gene3D - 172 233 - -
Csa06g01683 266 PANTHER SYNTAXIN-72 1 263 - -
Csa06g01683 266 ProSitePatterns Syntaxin / epimorphin family signature. 178 217 IPR006012 GO:0005484|GO:0006886|GO:0016020
Csa06g01683 266 MobiDBLite consensus disorder prediction 129 146 - -
Csa06g01683 266 SMART tSNARE_6 167 234 IPR000727 -
Csa06g01683 266 MobiDBLite consensus disorder prediction 122 146 - -
Csa06g01683 266 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 172 234 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03265 Csa-Chr3:29857638 Csa06g01683 Csa-Chr6:14745227 8.53E-133 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01683 K08506 - csv:101211289 471.855