Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01688 ATGTTTGATCTTAATCTCAATGTTGACTCGCCTGATGCGGCTCAGAAGGAGGACTCCGTTGTGTTCTTTGAGAAGCTTCCTCAAGGTTCGGGGAACCAAATGGATGAATCAGGAACTTCCAATTCTTCGATTGTCAATGCGGATACCTCCAGCAATGGTGGCGATGATGACTCGTGCTCCACACGCGCCGGTGGTGAGCTCTTCACGTTTAACTTCGAGATATTGAAGGCTGGAAGCGCGAACGACGTTGTCACGAAAGAGCTTTTTCCAATAGGTGGAACGGTGAATGCTGACTTCGGGATTCTTCAAGGGCATAACTCCGCCTCTTCTTCGTCAACTTCATCGAGGAAGAACTGGATCAACCTTGCGTTTGATCGAAGCGGGTCGGCAGGGGAGGGGAGAACGGTTCAGCCGGTTCAGCCTCAGCCGGTGAAGAAGAGCAGGAGGGGACCGAGGTCTCGGAGCTCACAGTACAGGGGCGTTACATTCTACCGGAGGACTGGGCGGTGGGAATCTCATATCTGGGACTGCGGGAAGCAAGTCTATCTCGGTGGATTCGACACTGCACATTCTGCAGCAAGAGCATATGATCGAGCTGCTATCAAGTTCAGAGGGGTTGATGCTGACATTAATTTCAATCTTAGTGATTATGAGGATGATCTGAAACAGATGAAGAATTTAAGCAAGGAAGAGTTCGTTCACATACTTCGTCGCCAGAGTACTGGTTTCTCAAGAGGGAGCTCCAAATATAGAGGGGTGACACTGCACAAATGTGGCCGATGGGAAGCTAGGATGGGGCAACTCCTTGGGAAAAAGTATATATATCTTGGGCTATTCGACAGCGAGGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCAATCAAATGTAATGGGCGGGAGGCAGTAACGAATTTTGAGCCTAGCACATACGGAGAGAAAATTTCTGAGGGCAGCAGTGAAGGTGGGTGGAACATGCTCGATTTGAATTTAGGGATTTCACCTCCCTCACTTGACAACTCTCCAAAGGATTCTGAGGGGCATCTGCGGTTTCAATCTGGTTCTTGTTATGCTAATGAGAGGAGCACAATGATGGAAAGCAATGCTGATGCAGCAGTTGGCGATCCACCTATGAAAGGACCGGTAATCACATCAGAGCATGCTCCCTTATGGAATGGTTTACAAACTAGCTTCTTTCCCAGTGAGGAAATCGTGACAGAGAAGAGACTTGCATTAGGTTCATCCCAAGGAATTCCCCCCAACTGGGGATGGCAAATTCATAGCCAGGTTAATGCCACCCAAGTGCCACTGTTCTCTGCTGCAGCATCATCAGGATTCTCATTTTCAGCTACCCATTTCCCGGCTGCCATCCATCCGCTGTGCCGTCCGGGCTCGACCGCCCATAACCTCCATTTCACTACACCCAAAGCTTCTACCCTCAACTCCCCCCAGTATCATCACCACCACCAGTTGAACCCACAACAGGCACCACCATAA 1494 49.67 MFDLNLNVDSPDAAQKEDSVVFFEKLPQGSGNQMDESGTSNSSIVNADTSSNGGDDDSCSTRAGGELFTFNFEILKAGSANDVVTKELFPIGGTVNADFGILQGHNSASSSSTSSRKNWINLAFDRSGSAGEGRTVQPVQPQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFNLSDYEDDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYGEKISEGSSEGGWNMLDLNLGISPPSLDNSPKDSEGHLRFQSGSCYANERSTMMESNADAAVGDPPMKGPVITSEHAPLWNGLQTSFFPSEEIVTEKRLALGSSQGIPPNWGWQIHSQVNATQVPLFSAAASSGFSFSATHFPAAIHPLCRPGSTAHNLHFTTPKASTLNSPQYHHHHQLNPQQAPP* 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14811535 14815484 + CsaV3_6G021830.1 Csa06g01688 533315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01688 497 ProSiteProfiles AP2/ERF domain profile. 157 213 IPR001471 GO:0003700|GO:0006355
Csa06g01688 497 MobiDBLite consensus disorder prediction 129 158 - -
Csa06g01688 497 CDD AP2 157 215 IPR001471 GO:0003700|GO:0006355
Csa06g01688 497 Gene3D AP2/ERF domain 248 307 IPR036955 GO:0003700|GO:0006355
Csa06g01688 497 Gene3D AP2/ERF domain 156 214 IPR036955 GO:0003700|GO:0006355
Csa06g01688 497 CDD AP2 248 308 IPR001471 GO:0003700|GO:0006355
Csa06g01688 497 ProSiteProfiles AP2/ERF domain profile. 249 306 IPR001471 GO:0003700|GO:0006355
Csa06g01688 497 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 457 - -
Csa06g01688 497 PRINTS Ethylene responsive element binding protein signature 250 261 IPR001471 GO:0003700|GO:0006355
Csa06g01688 497 PRINTS Ethylene responsive element binding protein signature 288 308 IPR001471 GO:0003700|GO:0006355
Csa06g01688 497 MobiDBLite consensus disorder prediction 30 58 - -
Csa06g01688 497 MobiDBLite consensus disorder prediction 473 497 - -
Csa06g01688 497 MobiDBLite consensus disorder prediction 28 58 - -
Csa06g01688 497 Pfam AP2 domain 157 205 IPR001471 GO:0003700|GO:0006355
Csa06g01688 497 Pfam AP2 domain 248 298 IPR001471 GO:0003700|GO:0006355
Csa06g01688 497 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 457 - -
Csa06g01688 497 SUPERFAMILY DNA-binding domain 156 214 IPR016177 GO:0003677
Csa06g01688 497 SUPERFAMILY DNA-binding domain 248 307 IPR016177 GO:0003677
Csa06g01688 497 SMART rav1_2 249 312 IPR001471 GO:0003700|GO:0006355
Csa06g01688 497 SMART rav1_2 157 219 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01423 Csa-Chr2:13663874 Csa06g01688 Csa-Chr6:14811535 4.62E-105 dispersed
Csa06g01688 Csa-Chr6:14811535 Csa06g02953 Csa-Chr6:25565842 1.54E-94 dispersed
Csa03g03241 Csa-Chr3:29729628 Csa06g01688 Csa-Chr6:14811535 5.28E-135 wgd
Csa04g01425 Csa-Chr4:14237172 Csa06g01688 Csa-Chr6:14811535 2.23E-120 wgd
Csa05g00635 Csa-Chr5:4200122 Csa06g01688 Csa-Chr6:14811535 2.75E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32029 PF00847 AP2 3.10E-09 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01688 K09284 - csv:101222024 982.245