Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01695 ATGGGTTGCTTTAGCCATATCAGAAAACAAAAGAAAAGATTATCAGGGAGCAAATTAGAAAGCATTCAACCAGCTTCTTCAGGAAATGCAGTAAAAGTAAAAAGGGATTTGAAAGTAAAAACAAGGGAAGAAGCAAAAGAGGTGGTTTACGAAAACGAGCACCGGTTGGGTTCAAATATAAAGAAAGAGGTTTGTGGTGAAGCAAAAACGTCAAACGAAGAGGTAAAAACATTTACATTCCATGAACTAGCAGAAGCAACAAGAAATTTCAAGTCGGATTGCTTTCTAGGTGAAGGAGGATTTGGCAAAGTTTACAAGGGCTATTTGGCAAGGATTAACAAGCTTGTAGCTATAAAGCAACTTGATTGGAGTCGAGGTCAAGGAATAAGAGAATTCATGGTGGAAGTGGTAACATTAAGTTTGGCCAATGACCCAAATCTTGTAAAATTGATAGGCTATTGTGTTGAGGGTGATCAAAGATTGTTGGTATATGAGTTCATGCCTTTAGGATCATTGGACAAACATTTGCACGATGTTCCAGCAGGGAACAAAGTGCTTGATTGGAATACAAGAATGAAGATAGCAGTAGGAGCAGCAAAAGGGTTGGAATATTTACACAACAAAATGAAGCCAGCAGTTATATATAGAGATTTAAAATGCTCAAATATTTTGTTGGGTGAAGATTATTGGCCAAAGCTCTCAGATTTTGGGCTAGCAAAAGTTGGTCCAAGTGGTGATAACACTCATGTGTCTACTAGAGTTATGGGCACTTATGGATATTGTGCACCAGATTACGCAATGACTGGCCAGTTGACATTCAAATGTGATATCTACAGCTTTGGGGTTGTTTTATTGGAACTAATCACGGGTAGAAAAGCTATTGATCATACAAGACCTTCAAAGGAGCTGAGTTTGGTAGCATGGGCAAGACCATTGTTCCGAGACCGAAAGAGATTCTTAGTAATGGCAGATCCAAGGTTGGATGGTCAATTTCCCATTAGAGGATTGTATCAAGCTCTTGCCATTGCAGCAATGTGTCTTCAAGAACAACCTACGATGAGACCAACAATATCAGAAGTTGTCGCAGCTTTAAATTTTCTTGCTTCTCAAAATTATTCTCACACAACCGATTAG 1134 38.8 MGCFSHIRKQKKRLSGSKLESIQPASSGNAVKVKRDLKVKTREEAKEVVYENEHRLGSNIKKEVCGEAKTSNEEVKTFTFHELAEATRNFKSDCFLGEGGFGKVYKGYLARINKLVAIKQLDWSRGQGIREFMVEVVTLSLANDPNLVKLIGYCVEGDQRLLVYEFMPLGSLDKHLHDVPAGNKVLDWNTRMKIAVGAAKGLEYLHNKMKPAVIYRDLKCSNILLGEDYWPKLSDFGLAKVGPSGDNTHVSTRVMGTYGYCAPDYAMTGQLTFKCDIYSFGVVLLELITGRKAIDHTRPSKELSLVAWARPLFRDRKRFLVMADPRLDGQFPIRGLYQALAIAAMCLQEQPTMRPTISEVVAALNFLASQNYSHTTD* 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14910133 14914714 + CsaV3_6G021900.1 Csa06g01695 533322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01695 377 PANTHER OS07G0668900 PROTEIN 3 375 - -
Csa06g01695 377 CDD STKc_IRAK 96 365 - -
Csa06g01695 377 SMART serkin_6 90 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01695 377 ProSitePatterns Protein kinases ATP-binding region signature. 96 119 IPR017441 GO:0005524
Csa06g01695 377 SUPERFAMILY Protein kinase-like (PK-like) 75 370 IPR011009 -
Csa06g01695 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Csa06g01695 377 Gene3D Phosphorylase Kinase; domain 1 51 166 - -
Csa06g01695 377 ProSiteProfiles Protein kinase domain profile. 90 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01695 377 Gene3D Transferase(Phosphotransferase) domain 1 167 376 - -
Csa06g01695 377 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 3 375 - -
Csa06g01695 377 Pfam Protein kinase domain 95 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01695 Csa-Chr6:14910133 Csa07g01499 Csa-Chr7:15365200 7.25E-144 dispersed
Csa01g01277 Csa-Chr1:8023792 Csa06g01695 Csa-Chr6:14910133 0 wgd
Csa03g03235 Csa-Chr3:29698154 Csa06g01695 Csa-Chr6:14910133 1.50E-163 wgd
Csa05g00641 Csa-Chr5:4259160 Csa06g01695 Csa-Chr6:14910133 5.69E-168 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78369 PF00069 Pkinase 7.50E-43 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01695 - - csv:101221327 762.681