Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01697 ATGGAACCGTTGGATAAACCAGCGCCGAAGTCGTCGTCACTGGCGCCATTTCCTCGGGACTCGCGAGGATCCTTAGAGGTTTTCAATCCCTCCTCCACTTACTCGTCCCGATCGATCAATTCCATCCCTCGGACGAACCCAGCGTGGCCCAATTGGGCGGAGCCACGTAGCAGTGCGGAGTCGGATTCAACCAAACTCCCCGCTAAACCGCCGAGTAAAACCGGCGAGGAGATTACGTCATGGATGGCTTTCAAGGACTCAAACCCTTCCCCTTCCCCTTCCCCACAGCCCTCATCCCCACTCGCTCAAAAAACCATCTCGGCGATTCTGAGCGAAAAGTCGCCGTCGGGGAAGACGCAATCGCAATCGCAATCGCAATCGGCGGACGAAGTGGGTTCCGCCGCCTTACGCGCCGCCGAGTGGGGATTGGTACTGAAAACCGATACGGAAACTGGGAAGCCGCAAGGCGTTGGGGTTAGAACTTCGGGCGGCGATGAACCGAATACGAAACAGGAAAACTCGCGAAGGACTTCGAATAATTCGGTGCGGAGTTCGGGCGACGAGATGTCGGAAGAAGGGGGAAGAGAAAGGGGGATTCCGAGAGTTTCTGAAGATTTAAAAGACGCTTTGTCGACATTTCAACAAACATTTGTGGTTTCTGATGCTACTAAACCTGATTATCCTATTATGTATGCTAGTGCTGGATTTTTCAAGATGACTGGCTATACTTCCAAGGAAGTTATTGGAAGAAATTGTCGATTTTTACAAGGTGCAGATACAGACCCAGAAGATGTGGCCAAGATCAGAGAAGCTTTACAAGCTGGGACAAGTTACTGTGGGAGGTTGTTGAATTACAAGAAAGATGGGACCCCTTTTTGGAACCTTCTTACTATTTCACCAATCAAAGATGATGATGGCAAAGTTCTCAAACTTATTGGAATGCAAGTGGAGGTGAGCAAACACACAGAAGGATTCAAGGATAAGATGGTCCGTCCCAATGGGTTGCCAGAATCATTGATTCGTTATGATGCCCGTCAAAAGGAGATGGCAACCAGTTCGGTAACGGAGCTTGTGCAGGCGGTGAAAAGGCCTCGGTCTCTAAGTGAATATAGGCCTCGAGCTCTAAGTGAATCTATGAACCGGCGGTTATTTAGAAAGTCCGGGGGCGGGGGTGGGGGTGGTGAGGGGGGGGGTAAGGATGAGAAGGACAAACTTGAACCGACTATGGTGAGACGGAAGTCTGAGAGTGCAGCAGCTCCAGCAGGTCGACGATCGCAGGGAGGAAGTAGAAGGTCGATGCAGCGTATTAATGAGGTGCCGGACAAAAAACCCAAAAAGTCTAGCCATCGTTCATTTATGGGGATTATGAGGAAAAGTCAATCAAATGTTGAAGAAAGCTTTGACATTGAAGAAGGTTCGGATGACGAGAATGAGTCCGACGACGATGTTAGACCAGATAGTGTCGATGACAAAGTAAGGCAGAGGGAAATGAGGAAGGGTATTGATTTAGCTACTACCCTTGAACGTATAGAAAAAAACTTTGTGATTACTGATCCTAGATTGCCTGACAATCCCATTATATTTGCATCTGATAGCTTTCTGGAACTAACCGAGTACAGTAGAGAAGAAATCTTGGGAAGAAATTGCAGATTTCTGCAAGGTCCTGAAACTGATCGAACGACCGTCAAGAAAATAAGAGATGCAATTGACAATCAAACAGACGTTACAGTGCAGCTTATTAACTACACAAAAAGTGGTAAGAAGTTTTGGAACCTGTTTCATCTACAACCTATGCGTGACCAGAAGGGTGAAGTTCAATATTTTATTGGAGTTCAACTCGACGGTAGTCAACATGTGGAACCACTAAGCAATTGCATAGCGGAAAGTACTGCAAAGGAGGGCGAAAAACTGATAAAAGAAACTGCTGAAAATGTTGATTTGGCAGCCAGAGAACTTCCTGATGCCAATTTGACACCAGAAGATTTATGGGCAAATCATTCTAAGTTGGTTCAACCAAAACCTCACAGAAAGGATAGTCCTTCTTGGCAAGCTATCCAGAAGATTTTGGACAGTGGAGAACAGATAGGACTGAAACATTTCAAGCCAGTGAAGCCTTTGGGATCTGGTGATACTGGCAGTGTGCATTTGGTAGAACTGTGTGGAACTGATCAATACTTTGCAATGAAGGCAATGGATAAGGGTGTCATGCTCAACCGCAACAAGGTGCATAGAGCTTGTGCCGAGAGGGAAATACTTGACATGCTGGATCATCCTTTTCTTCCTGCGTTATACGCTTCGTTTCAGACAAAAACACATGTTTGTCTTATAACTGATTACTGCCCTGGTGGAGAACTCTTTCTGCTTTTGGACAGACAACCCACAAAGGTCATAAAGGAAGATGCTGTTAGGTTTTATGCTGCTGAAGTTGTCGTCGCATTGGAGTATCTCCATTGTCAAGGGATAATTTATCGAGATCTAAAGCCTGAAAATGTTCTACTCCAGAGCAACGGCCATGTTGCCTTGACGGATTTTGACTTGTCATGTTTGACTTCTTGTAAACCTCAGCTTTTGCTTCCAGCAGCAAATGAAAAGAAAAAACAATCAAAAACTCAACAGACTCCGATCTTTATGGCCGAACCCATGCGAGCTTCGAACTCCTTTGTTGGAACTGAAGAGTATATAGCACCGGAAATCATTACTGGGGCTGGCCATACTAGTGCAGTGGACTGGTGGGCTTTGGGCATCCTTCTATATGAAATGCTTTATGGATACACACCCTTTAGGGGGAAGACAAGGCAAAAGACCTTTGCCAACATTCTCCATAAGGATCTTAAATTTCCAAGAAGTATATCGGCTAGCCTCAATGCAAAGCAGTTAATTTTTAGGTTATTGCATAGAGACCCCAAAAACCGATTAGGTTCTCGAGAAGGAGCCAGTGAAATCAAACGGCATCCTTTCTTCCGTGGCGTCAATTGGGCGCTTGTCCGTTGCATGAATCCTCCCGAGCTCGAAGCGCCTCTTTTCCAGACCACCGATGGCGAAAAAGATGCTAATAAAGCATCAGATTTTGATCCAAAAGAACTTGAACTTAGTGTTTTCTGA 3102 45.91 MEPLDKPAPKSSSLAPFPRDSRGSLEVFNPSSTYSSRSINSIPRTNPAWPNWAEPRSSAESDSTKLPAKPPSKTGEEITSWMAFKDSNPSPSPSPQPSSPLAQKTISAILSEKSPSGKTQSQSQSQSADEVGSAALRAAEWGLVLKTDTETGKPQGVGVRTSGGDEPNTKQENSRRTSNNSVRSSGDEMSEEGGRERGIPRVSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPEDVAKIREALQAGTSYCGRLLNYKKDGTPFWNLLTISPIKDDDGKVLKLIGMQVEVSKHTEGFKDKMVRPNGLPESLIRYDARQKEMATSSVTELVQAVKRPRSLSEYRPRALSESMNRRLFRKSGGGGGGGEGGGKDEKDKLEPTMVRRKSESAAAPAGRRSQGGSRRSMQRINEVPDKKPKKSSHRSFMGIMRKSQSNVEESFDIEEGSDDENESDDDVRPDSVDDKVRQREMRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDRTTVKKIRDAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLSNCIAESTAKEGEKLIKETAENVDLAARELPDANLTPEDLWANHSKLVQPKPHRKDSPSWQAIQKILDSGEQIGLKHFKPVKPLGSGDTGSVHLVELCGTDQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLDRQPTKVIKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQSNGHVALTDFDLSCLTSCKPQLLLPAANEKKKQSKTQQTPIFMAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPRSISASLNAKQLIFRLLHRDPKNRLGSREGASEIKRHPFFRGVNWALVRCMNPPELEAPLFQTTDGEKDANKASDFDPKELELSVF* 1034
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14924855 14937590 + CsaV3_6G021920.1 Csa06g01697 533324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01697 1033 MobiDBLite consensus disorder prediction 1 200 - -
Csa06g01697 1033 ProSitePatterns Serine/Threonine protein kinases active-site signature. 821 833 IPR008271 GO:0004672|GO:0006468
Csa06g01697 1033 MobiDBLite consensus disorder prediction 396 411 - -
Csa06g01697 1033 MobiDBLite consensus disorder prediction 162 187 - -
Csa06g01697 1033 MobiDBLite consensus disorder prediction 25 47 - -
Csa06g01697 1033 CDD PAS 229 318 IPR000014 -
Csa06g01697 1033 SMART serkin_6 700 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01697 1033 SMART pas_2 501 570 IPR000014 -
Csa06g01697 1033 SMART pas_2 204 273 IPR000014 -
Csa06g01697 1033 CDD STKc_phototropin_like 698 1006 - -
Csa06g01697 1033 MobiDBLite consensus disorder prediction 99 131 - -
Csa06g01697 1033 ProSiteProfiles Protein kinase domain profile. 700 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01697 1033 SUPERFAMILY Protein kinase-like (PK-like) 678 1008 IPR011009 -
Csa06g01697 1033 SUPERFAMILY PYP-like sensor domain (PAS domain) 515 614 IPR035965 -
Csa06g01697 1033 Pfam PAS domain 522 614 IPR000014 -
Csa06g01697 1033 Pfam PAS domain 223 319 IPR000014 -
Csa06g01697 1033 MobiDBLite consensus disorder prediction 363 495 - -
Csa06g01697 1033 MobiDBLite consensus disorder prediction 366 380 - -
Csa06g01697 1033 ProSitePatterns Protein kinases ATP-binding region signature. 706 729 IPR017441 GO:0005524
Csa06g01697 1033 ProSiteProfiles PAC domain profile. 276 330 IPR000700 -
Csa06g01697 1033 TIGRFAM sensory_box: PAS domain S-box protein 524 614 IPR000014 -
Csa06g01697 1033 TIGRFAM sensory_box: PAS domain S-box protein 229 321 IPR000014 -
Csa06g01697 1033 CDD PAS 514 614 IPR000014 -
Csa06g01697 1033 Gene3D Phosphorylase Kinase; domain 1 699 1016 - -
Csa06g01697 1033 SMART pac_2 279 321 IPR001610 -
Csa06g01697 1033 SMART pac_2 576 618 IPR001610 -
Csa06g01697 1033 PANTHER PHOTOTROPIN-1 149 1033 - -
Csa06g01697 1033 Gene3D PAS domain 216 371 - -
Csa06g01697 1033 Gene3D PAS domain 487 652 - -
Csa06g01697 1033 PANTHER FLIPPASE KINASE 1-RELATED 149 1033 - -
Csa06g01697 1033 ProSiteProfiles PAS repeat profile. 503 572 IPR000014 -
Csa06g01697 1033 ProSiteProfiles PAC domain profile. 573 627 IPR000700 -
Csa06g01697 1033 SUPERFAMILY PYP-like sensor domain (PAS domain) 223 315 IPR035965 -
Csa06g01697 1033 Pfam Protein kinase domain 702 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01697 1033 Gene3D Transferase(Phosphotransferase) domain 1 784 1010 - -
Csa06g01697 1033 MobiDBLite consensus disorder prediction 1006 1033 - -
Csa06g01697 1033 MobiDBLite consensus disorder prediction 467 483 - -
Csa06g01697 1033 ProSiteProfiles PAS repeat profile. 202 273 IPR000014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01113 Csa-Chr5:11354924 Csa06g01697 Csa-Chr6:14924855 3.22E-14 dispersed
Csa06g01697 Csa-Chr6:14924855 Csa07g00227 Csa-Chr7:1788691 1.06E-16 dispersed
Csa07g01557 Csa-Chr7:15913650 Csa06g01697 Csa-Chr6:14924855 1.23E-68 dispersed
Csa06g01697 Csa-Chr6:14924855 Csa06g00994 Csa-Chr6:8056924 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78370 PF00069 Pkinase 2.80E-63 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01697 K20715 - csv:101214662 1965.66