Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01709 ATGGATTGTGGAAGAAGATTTGGATTGCTGTCCTGGGTTTTGTTTATCTCCTTGCTGCCTTCCATTTTTTGCTTGTTTAATCCGGTAGATAATTATCTTATTGATTGTGGATCGGCTGCTAATGTCTCTGTGGGTAATCGTGTTTTCATGGCTGATGATAATTTGGCTTCAAAGTTTCTTTCAACCCCACAAGTGATTATGGCTGATACCAATACATCTTCATTACTTGCTACTTCTTCCAACGATTCCTTGTTATTCAAAACGGCTAGAGTTTTCACTGGAACATCAAAATACAAGTTCCCAATAAAGGCTGGAAGGCACTGGATCCGTCTCTATTTCTTTCCATTTGTGTTTTCTGTCTACAATATGAGTGCTGCAAATTTTAGTGTTTCGACCCAAGATTTTGTTCTGTTGAGAGATTTAGCTGGAGGGAAGAATCCTATAATCAAAGAATTTTCTGTGAACTTAGCATCAGATACACTTGAAGTTATATTTGCTCCTGTTAATGGCTCTATTGCATATGTGAATGCCATTGAAGTTATTTCTGTTCCTGACATCCTCATTGGTGATGAAGCCATTTTGTTAGAACCATCTGGTAAATTTCAAGGGTTGTCTAATCAGGCATATGAGACAGTTGCTAGAGTTAATATGGGTGGGCCGAAAGTTGCTCCTGATAACGATCCTCTTACTCGGAGTTGGGTTTCTGATGACAGCTTTATAGTTAATAAGAATCTTGCTACAAGTTTCTCCAACATTGCAGCTGTTAAATATAGTGCTGAAGGGGCAGCGCCAGAGATTGCTCCAAATGTTGTCTATGGTACCCTCTCTGAGATGAACTCGAAGGATGATCCAAACAGCAATTTCAATGTGACGTGGAAGTTTAAAGTGGATCCTGAGTTTCAGTATCTTGTTAGGTTTCACTTCTGTGATATTGTGAGCAAATCTCTACATGAACTTTATTTCAATGTTTACATTGACTCATGGCTGGTTGTTGGGGGTCTAGATCTCAGTGTTCCTCTTAACAATGCTTTGAGCACTGCATACTATATAGACTCTGTATCAGGAGTGATCAATAATGACGAACTTCTTGTGAGTATTGGCCCAGCGAATATAGCTAATGTGTATCCAAATGCCATTTTAAATGGTCTGGAAATCATGAAAATGAATAACTCAGTTGGCAGTCTTAGTGGGAAAGACTCTGTAATTAGTTTTCCAGACTCGAATTCTTCAAGTAAGCACATTGGTGTCATTGTGGGTGTGTGCGTTGGGGCATTTGTTGCAGCTCTATTGGTTGGCATTCTGTTTATACTGCACAAACGAAGAAGAAAGGGAATGCATCAAGCTACATCGAAAACATGGATTTCAATATCCACTGCTGGAGAAATGTCACACACTATGGGAAGTAAATACTCAAATGGTACAATCACAAGTGCTGCTTCCAACTATGGATATCGTATACCTTTTGCAACAGTTCAAGAGGCTACTAATAACTTTGATGAGAGTTGGGTTATTGGTATTGGTGGGTTTGGGAAAGTATACAAAGGAGTTTTAAATGATGGCACCAAAGTTGCTGTAAAGAGGGGTAATCCACGTTCCCAACAAGGACTAGCAGAGTTTCAAACTGAAATCGAGATGCTATCACAATTTCGTCATCGTCATCTTGTTTCGTTGATTGGATACTGTGATGAGAGAAATGAGATGATACTGATTTACGAGTACATGGAACAGGGAACACTGAAGAGTCATCTATATGGTTCGGATTTCCCTAGTTTGAGCTGGAAAGAGAGATTGGAGGTCTGCATTGGAGCCGCTAGGGGACTTCATTACCTCCACACTGGTTATGCTAAACCCGTTATTCATCGTGATGTGAAGTCTGCTAATATTTTGCTCGATGAAACTCTCATGGCAAAGGTTGCTGACTTTGGACTTTCAAAGACGGGACCTGAAATTGATCAAACCCATGTCAGTACAGCTGTGAAAGGAAGTTTTGGGTACCTTGATCCTGAATATTTCCGGAGGCAACAACTGACTGAGAAATCAGATGTTTATTCTTTTGGGGTTGTTTTGTTTGAAGTCCTTTGTGCACGACCTGTCATAGATCCAACCCTTCCTAGAGAAATGGTAAACTTAGCTGAATGGGCAATGAAATGGCAGAAGAAAGGGCAGTTGGATCAAATAATTGATTCTACTTTAGTAGGAAAAATTAGATCAACTTCTCTTAGAAAGTTTGGAGAAACTGCTGAAAAATGCTTGGCTGACTATGGAGTTGACAGACCATCGATGGGAGACGTTTTATGGAATTTGGAGTATGCGCTTCAGCTACAAGAAGCTGTCATTGAAACTGATCCTGAAGATAACAGTACAAATATGATTGGTGAGCTCTCTCCACAAATTAACAATTTCAACAACATTGAGGCAGGTGTTTCTGCCACACGGTTCGACATTCCGGGTGTGGATGATCTTTCTGGAGTCTCTATGAGTAGGGTGTTCTCTCAGCTGGTGAAATCTGAGGGTAGATGA 2520 40.2 MDCGRRFGLLSWVLFISLLPSIFCLFNPVDNYLIDCGSAANVSVGNRVFMADDNLASKFLSTPQVIMADTNTSSLLATSSNDSLLFKTARVFTGTSKYKFPIKAGRHWIRLYFFPFVFSVYNMSAANFSVSTQDFVLLRDLAGGKNPIIKEFSVNLASDTLEVIFAPVNGSIAYVNAIEVISVPDILIGDEAILLEPSGKFQGLSNQAYETVARVNMGGPKVAPDNDPLTRSWVSDDSFIVNKNLATSFSNIAAVKYSAEGAAPEIAPNVVYGTLSEMNSKDDPNSNFNVTWKFKVDPEFQYLVRFHFCDIVSKSLHELYFNVYIDSWLVVGGLDLSVPLNNALSTAYYIDSVSGVINNDELLVSIGPANIANVYPNAILNGLEIMKMNNSVGSLSGKDSVISFPDSNSSSKHIGVIVGVCVGAFVAALLVGILFILHKRRRKGMHQATSKTWISISTAGEMSHTMGSKYSNGTITSAASNYGYRIPFATVQEATNNFDESWVIGIGGFGKVYKGVLNDGTKVAVKRGNPRSQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDERNEMILIYEYMEQGTLKSHLYGSDFPSLSWKERLEVCIGAARGLHYLHTGYAKPVIHRDVKSANILLDETLMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPTLPREMVNLAEWAMKWQKKGQLDQIIDSTLVGKIRSTSLRKFGETAEKCLADYGVDRPSMGDVLWNLEYALQLQEAVIETDPEDNSTNMIGELSPQINNFNNIEAGVSATRFDIPGVDDLSGVSMSRVFSQLVKSEGR* 840
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15028080 15032322 - CsaV3_6G022040.1 Csa06g01709 533336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01709 839 ProSitePatterns Protein kinases ATP-binding region signature. 504 526 IPR017441 GO:0005524
Csa06g01709 839 Pfam Malectin-like domain 34 388 IPR024788 -
Csa06g01709 839 SMART serkin_6 498 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01709 839 Gene3D Transferase(Phosphotransferase) domain 1 574 792 - -
Csa06g01709 839 ProSiteProfiles Protein kinase domain profile. 498 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01709 839 Gene3D - 207 390 - -
Csa06g01709 839 Gene3D - 31 183 - -
Csa06g01709 839 ProSitePatterns Serine/Threonine protein kinases active-site signature. 618 630 IPR008271 GO:0004672|GO:0006468
Csa06g01709 839 SUPERFAMILY Protein kinase-like (PK-like) 475 769 IPR011009 -
Csa06g01709 839 CDD STKc_IRAK 504 769 - -
Csa06g01709 839 PANTHER RECEPTOR-LIKE PROTEIN KINASE THESEUS 1 19 831 - -
Csa06g01709 839 Gene3D Phosphorylase Kinase; domain 1 459 573 - -
Csa06g01709 839 Pfam Protein tyrosine and serine/threonine kinase 503 697 IPR001245 GO:0004672|GO:0006468
Csa06g01709 839 PANTHER OS07G0166700 PROTEIN 19 831 IPR045272 GO:0004714|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01709 Csa-Chr4:16488228 Csa06g01709 Csa-Chr6:15028080 1.78E-71 dispersed
Csa01g00257 Csa-Chr1:1601882 Csa06g01709 Csa-Chr6:15028080 0 transposed
Csa02g00299 Csa-Chr2:2059910 Csa06g01709 Csa-Chr6:15028080 0 transposed
Csa03g01740 Csa-Chr3:13045860 Csa06g01709 Csa-Chr6:15028080 0 transposed
Csa03g02768 Csa-Chr3:26529068 Csa06g01709 Csa-Chr6:15028080 1.81E-07 transposed
Csa03g02769 Csa-Chr3:26529383 Csa06g01709 Csa-Chr6:15028080 1.12E-68 transposed
Csa03g04139 Csa-Chr3:36282254 Csa06g01709 Csa-Chr6:15028080 0 transposed
Csa04g01700 Csa-Chr4:16396422 Csa06g01709 Csa-Chr6:15028080 0 transposed
Csa05g02152 Csa-Chr5:24585101 Csa06g01709 Csa-Chr6:15028080 0 transposed
Csa06g00082 Csa-Chr6:530193 Csa06g01709 Csa-Chr6:15028080 1.59E-75 transposed
Csa06g02978 Csa-Chr6:25738216 Csa06g01709 Csa-Chr6:15028080 0 transposed
Csa06g03855 Csa-Chr6:30576449 Csa06g01709 Csa-Chr6:15028080 0 transposed
Csa07g02213 Csa-Chr7:20798979 Csa06g01709 Csa-Chr6:15028080 0 transposed
Csa05g00654 Csa-Chr5:4358095 Csa06g01709 Csa-Chr6:15028080 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78371 PF12819 Malectin_like 6.50E-31 CL0202 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01709 - - csv:101218488 1660.2