Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01715 ATGCCACAAAAGGGAATGAGGAGTGTGTTCTTCAATTCTCCAATTTCTTCTTCTGTACCGAGCACGCCGTCGTCCTCGTCGTCCTCGCACTCGTCGTCTCGACCCACTTTACCGGATTCAATGGTTGAGGAGAATCTTGAAGTTGCAGAATCGTTTGTGATGAGGTGGAGACCTGATTCCACCATTGTTGGTTCTTTGTTTCAAGGAGATGACCGTGATGAAGCTCGGAAGTATCTCAAAGCCGTTAAGGGTTTGCATAATTCCATGCATAGCCTTGCTTCTCGGGATTCATCTTCCCGGAAGCTTATGCATGCTCATGATTTGATGAAGATAGCTATGGAGAGGCTACAGAAAGAGTTTTATCAGATTTTGTCAGCTAATCGAGAGTATTTGTATCCGGAATCGGTTTCTGGCATCCAATCGCCGATGACGATATCGGCCAGATCGAGTGTTTCTGATTTTGAATTGGAATCGGAAGATGAATTCCGATTTGCTAATGAATCTATTGCGGAGGTTGAGCGAGTTTCTATGTCGGCTATGGCGGATTTGAAAGCAATTGCGGATTGTATGATATCGACGGGCTATGGTAAAGAATGTGTGAAGGTTTATAAAATTGTGAGGAAGTCGATAATTGATGAGAGTCTCTATAATCTAGGGATTGAGAAATTGAGTTTTTCGAAAGTTCAGAAGATGGATTGGGAGGTTCTGGAAATCAAAATCAAAATCTGGTTGAAAGGTGTCAAAACGGCAGTGAAGTCTTTGTTTGAAGGAGAGAAAATTCTTTGCGATCATGTTTTCTCAGGTTCTGTTCCAATCAGAGAATCGTGCTTCGCTCAAATTTCCAAAGACGGAGCAGAAATTCTGTTTGGATTTCCAGAATTAGTTGCGAAATACAAGAAAACTCCGGAGAAAATTTTCATTATGCTAGATCTATACGAAGCCATAGCCGATCTCTGGCCGGAGATCGATTACATTTTCTCATCCACAGCAACATCAATGATACAGTCACAAGCCGTCAGCTCACTAATCAAACTCGGAGAGAACATTCGAACATTACTCTCGGAATTCGAAATGGCTATTCAGAAAGAATCATCGAAAACGCCTGTTCCTAGAGGCGGAGTTCATCCACTCACTCGCTACGTGATGAACTACATCTCATTCCTCTCCGATTACAGTGGAATACTAAACGACATTGTAGCCGATTGGTCTTTAGCAACAAAATTATCAATGCCAGAATCATATTACGGAACACCTAAACAAGAAGATAGTCCAATTACCTTACGTTTCGCTTGGTTGATTCTCGTCCTCCTTTGCAAACTGGACGGCAAAGCAGAGCATTACAACGACGTCGCTCTCTCCTACTTGTTCTTAGCAAACAATCTCCAGTACATCGTTGAAAAAGTTCGTACCTCGAATCTGAGATTCATCCTCGGCAGTGAATGGGTTGAGAGACACGAATCAAAGATCAAACTGTACTCCTCCAAGTACAGACGCATTGGATGGAGTGGAGTTTTCTCGTCGCTACCGACGGATGTGACGGCGGAAATATCGCCGGAGGAAGCAAGAGAATCGTTTATAAATTTCAACAGAGCTTTTGAAGAAACTTACAGAAAACAAACCTCATGGATCGTCCCCGATCAGAAGCTTCGCGATGAAATAAAGATCTTATTAGCGAGGGAAATGGGAGCTCTCTATGGCGAGTTTTACAAGAGGAATCGGGTTCGGGTTAGGCGGGTTTCTGGATCGGACCATGCGGTCCGATTATCGCCTGATGATTTGGGCAACTATTTATCGGATCTATTTTACGGGCATGGATCCGAAAGTGTTGGGAGCGGGTCCTCGTCTCATTCATCATCCCATTCCTCGCCGTCTTCTCGAGGGCGATTGGCCCGTTGA 1896 43.93 MPQKGMRSVFFNSPISSSVPSTPSSSSSSHSSSRPTLPDSMVEENLEVAESFVMRWRPDSTIVGSLFQGDDRDEARKYLKAVKGLHNSMHSLASRDSSSRKLMHAHDLMKIAMERLQKEFYQILSANREYLYPESVSGIQSPMTISARSSVSDFELESEDEFRFANESIAEVERVSMSAMADLKAIADCMISTGYGKECVKVYKIVRKSIIDESLYNLGIEKLSFSKVQKMDWEVLEIKIKIWLKGVKTAVKSLFEGEKILCDHVFSGSVPIRESCFAQISKDGAEILFGFPELVAKYKKTPEKIFIMLDLYEAIADLWPEIDYIFSSTATSMIQSQAVSSLIKLGENIRTLLSEFEMAIQKESSKTPVPRGGVHPLTRYVMNYISFLSDYSGILNDIVADWSLATKLSMPESYYGTPKQEDSPITLRFAWLILVLLCKLDGKAEHYNDVALSYLFLANNLQYIVEKVRTSNLRFILGSEWVERHESKIKLYSSKYRRIGWSGVFSSLPTDVTAEISPEEARESFINFNRAFEETYRKQTSWIVPDQKLRDEIKILLAREMGALYGEFYKRNRVRVRRVSGSDHAVRLSPDDLGNYLSDLFYGHGSESVGSGSSSHSSSHSSPSSRGRLAR* 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15102299 15105074 - CsaV3_6G022100.1 Csa06g01715 533342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01715 631 MobiDBLite consensus disorder prediction 1 41 - -
Csa06g01715 631 Gene3D Exocyst complex component Exo70 61 609 - -
Csa06g01715 631 MobiDBLite consensus disorder prediction 606 631 - -
Csa06g01715 631 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 5 608 - -
Csa06g01715 631 MobiDBLite consensus disorder prediction 9 39 - -
Csa06g01715 631 PANTHER EXOCYST COMPLEX PROTEIN EXO70 5 608 IPR004140 GO:0000145|GO:0006887
Csa06g01715 631 Pfam Exo70 exocyst complex subunit 243 599 IPR046364 GO:0000145|GO:0005546|GO:0006887
Csa06g01715 631 SUPERFAMILY Cullin repeat-like 65 601 IPR016159 -
Csa06g01715 631 MobiDBLite consensus disorder prediction 607 631 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02355 Csa-Chr1:20716420 Csa06g01715 Csa-Chr6:15102299 0 dispersed
Csa06g01715 Csa-Chr6:15102299 Csa01g03408 Csa-Chr1:30935673 1.79E-105 dispersed
Csa03g02774 Csa-Chr3:26573177 Csa06g01715 Csa-Chr6:15102299 3.21E-110 transposed
Csa04g00918 Csa-Chr4:6741979 Csa06g01715 Csa-Chr6:15102299 4.57E-89 transposed
Csa07g02292 Csa-Chr7:21327491 Csa06g01715 Csa-Chr6:15102299 1.23E-35 transposed
Csa03g03213 Csa-Chr3:29599876 Csa06g01715 Csa-Chr6:15102299 0 wgd
Csa04g01453 Csa-Chr4:14408827 Csa06g01715 Csa-Chr6:15102299 1.22E-141 wgd
Csa05g00661 Csa-Chr5:4442429 Csa06g01715 Csa-Chr6:15102299 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01715 K07195 - csv:101212978 1162.9