Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01715 ATGCCACAAAAGGGAATGAGGAGTGTGTTCTTCAATTCTCCAATTTCTTCTTCTGTACCGAGCACGCCGTCGTCCTCGTCGTCCTCGCACTCGTCGTCTCGACCCACTTTACCGGATTCAATGGTTGAGGAGAATCTTGAAGTTGCAGAATCGTTTGTGATGAGGTGGAGACCTGATTCCACCATTGTTGGTTCTTTGTTTCAAGGAGATGACCGTGATGAAGCTCGGAAGTATCTCAAAGCCGTTAAGGGTTTGCATAATTCCATGCATAGCCTTGCTTCTCGGGATTCATCTTCCCGGAAGCTTATGCATGCTCATGATTTGATGAAGATAGCTATGGAGAGGCTACAGAAAGAGTTTTATCAGATTTTGTCAGCTAATCGAGAGTATTTGTATCCGGAATCGGTTTCTGGCATCCAATCGCCGATGACGATATCGGCCAGATCGAGTGTTTCTGATTTTGAATTGGAATCGGAAGATGAATTCCGATTTGCTAATGAATCTATTGCGGAGGTTGAGCGAGTTTCTATGTCGGCTATGGCGGATTTGAAAGCAATTGCGGATTGTATGATATCGACGGGCTATGGTAAAGAATGTGTGAAGGTTTATAAAATTGTGAGGAAGTCGATAATTGATGAGAGTCTCTATAATCTAGGGATTGAGAAATTGAGTTTTTCGAAAGTTCAGAAGATGGATTGGGAGGTTCTGGAAATCAAAATCAAAATCTGGTTGAAAGGTGTCAAAACGGCAGTGAAGTCTTTGTTTGAAGGAGAGAAAATTCTTTGCGATCATGTTTTCTCAGGTTCTGTTCCAATCAGAGAATCGTGCTTCGCTCAAATTTCCAAAGACGGAGCAGAAATTCTGTTTGGATTTCCAGAATTAGTTGCGAAATACAAGAAAACTCCGGAGAAAATTTTCATTATGCTAGATCTATACGAAGCCATAGCCGATCTCTGGCCGGAGATCGATTACATTTTCTCATCCACAGCAACATCAATGATACAGTCACAAGCCGTCAGCTCACTAATCAAACTCGGAGAGAACATTCGAACATTACTCTCGGAATTCGAAATGGCTATTCAGAAAGAATCATCGAAAACGCCTGTTCCTAGAGGCGGAGTTCATCCACTCACTCGCTACGTGATGAACTACATCTCATTCCTCTCCGATTACAGTGGAATACTAAACGACATTGTAGCCGATTGGTCTTTAGCAACAAAATTATCAATGCCAGAATCATATTACGGAACACCTAAACAAGAAGATAGTCCAATTACCTTACGTTTCGCTTGGTTGATTCTCGTCCTCCTTTGCAAACTGGACGGCAAAGCAGAGCATTACAACGACGTCGCTCTCTCCTACTTGTTCTTAGCAAACAATCTCCAGTACATCGTTGAAAAAGTTCGTACCTCGAATCTGAGATTCATCCTCGGCAGTGAATGGGTTGAGAGACACGAATCAAAGATCAAACTGTACTCCTCCAAGTACAGACGCATTGGATGGAGTGGAGTTTTCTCGTCGCTACCGACGGATGTGACGGCGGAAATATCGCCGGAGGAAGCAAGAGAATCGTTTATAAATTTCAACAGAGCTTTTGAAGAAACTTACAGAAAACAAACCTCATGGATCGTCCCCGATCAGAAGCTTCGCGATGAAATAAAGATCTTATTAGCGAGGGAAATGGGAGCTCTCTATGGCGAGTTTTACAAGAGGAATCGGGTTCGGGTTAGGCGGGTTTCTGGATCGGACCATGCGGTCCGATTATCGCCTGATGATTTGGGCAACTATTTATCGGATCTATTTTACGGGCATGGATCCGAAAGTGTTGGGAGCGGGTCCTCGTCTCATTCATCATCCCATTCCTCGCCGTCTTCTCGAGGGCGATTGGCCCGTTGA 1896 43.93 MPQKGMRSVFFNSPISSSVPSTPSSSSSSHSSSRPTLPDSMVEENLEVAESFVMRWRPDSTIVGSLFQGDDRDEARKYLKAVKGLHNSMHSLASRDSSSRKLMHAHDLMKIAMERLQKEFYQILSANREYLYPESVSGIQSPMTISARSSVSDFELESEDEFRFANESIAEVERVSMSAMADLKAIADCMISTGYGKECVKVYKIVRKSIIDESLYNLGIEKLSFSKVQKMDWEVLEIKIKIWLKGVKTAVKSLFEGEKILCDHVFSGSVPIRESCFAQISKDGAEILFGFPELVAKYKKTPEKIFIMLDLYEAIADLWPEIDYIFSSTATSMIQSQAVSSLIKLGENIRTLLSEFEMAIQKESSKTPVPRGGVHPLTRYVMNYISFLSDYSGILNDIVADWSLATKLSMPESYYGTPKQEDSPITLRFAWLILVLLCKLDGKAEHYNDVALSYLFLANNLQYIVEKVRTSNLRFILGSEWVERHESKIKLYSSKYRRIGWSGVFSSLPTDVTAEISPEEARESFINFNRAFEETYRKQTSWIVPDQKLRDEIKILLAREMGALYGEFYKRNRVRVRRVSGSDHAVRLSPDDLGNYLSDLFYGHGSESVGSGSSSHSSSHSSPSSRGRLAR* 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15102299 15105074 - CsaV3_6G022100.1 Csa06g01715 533342

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01715 631 MobiDBLite consensus disorder prediction 1 41 - -
Csa06g01715 631 Gene3D Exocyst complex component Exo70 61 609 - -
Csa06g01715 631 MobiDBLite consensus disorder prediction 606 631 - -
Csa06g01715 631 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 5 608 - -
Csa06g01715 631 MobiDBLite consensus disorder prediction 9 39 - -
Csa06g01715 631 PANTHER EXOCYST COMPLEX PROTEIN EXO70 5 608 IPR004140 GO:0000145|GO:0006887
Csa06g01715 631 Pfam Exo70 exocyst complex subunit 243 599 IPR046364 GO:0000145|GO:0005546|GO:0006887
Csa06g01715 631 SUPERFAMILY Cullin repeat-like 65 601 IPR016159 -
Csa06g01715 631 MobiDBLite consensus disorder prediction 607 631 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01715 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101212978 1162.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02355 Csa-Chr1:20716420 Csa06g01715 Csa-Chr6:15102299 0 dispersed
Csa06g01715 Csa-Chr6:15102299 Csa01g03408 Csa-Chr1:30935673 1.79E-105 dispersed
Csa03g02774 Csa-Chr3:26573177 Csa06g01715 Csa-Chr6:15102299 3.21E-110 transposed
Csa04g00918 Csa-Chr4:6741979 Csa06g01715 Csa-Chr6:15102299 4.57E-89 transposed
Csa07g02292 Csa-Chr7:21327491 Csa06g01715 Csa-Chr6:15102299 1.23E-35 transposed
Csa03g03213 Csa-Chr3:29599876 Csa06g01715 Csa-Chr6:15102299 0 wgd
Csa04g01453 Csa-Chr4:14408827 Csa06g01715 Csa-Chr6:15102299 1.22E-141 wgd
Csa05g00661 Csa-Chr5:4442429 Csa06g01715 Csa-Chr6:15102299 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g377 . . Bda02g00802 Bda09g01492 Bpe01g00153 . Bma14g00483 . . . . . . . Sed13g1351 Cpe05g00891 . Bhi08g00343 Tan01g2524 Cmetu12g0712 . . . Lcy11g0247 Cla02g01331 Cam02g1412 Cec02g1430 Cco02g1463 Clacu02g1391 Cmu02g1351 Cre02g1670 Cone1ag0674 Cone5ag1180 Cone18ag0321 Cone11ag1266 . Csa06g01715 . Cme11g01259 Blo13g01090 Blo14g00136 Bda07g00609 . Bpe08g00122 Bpe11g00785 Bma07g00116 Bma11g00137 Sed01g0928 Cmo02g00840 Cmo20g00472 Cma02g00839 Cma20g00434 . . . . Bhi10g00657 Tan05g0340 Cmetu11g2447 . Hepe08g0821 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g02705 . 14 652 EXO70 exocyst subunit family AT5G03540 76.7 1.0e-285 979.2
Csa06g02721 . 1 639 EXO70 exocyst subunit family AT5G03540 70.7 6.0e-265 910.2
Csa06g02723 . 1 421 EXO70 exocyst subunit family AT5G03540 68.9 8.8e-168 587.4
Csa06g02722 CCT 1 182 EXO70 exocyst subunit family AT5G03540 74.7 5.3e-72 269.2
Csa06g02721 . 1 639 EXO70 exocyst subunit family AT5G52340 79.8 1.9e-297 1018.1
Csa05g02705 . 16 652 EXO70 exocyst subunit family AT5G52340 74.4 1.1e-271 932.6
Csa06g02723 . 1 421 EXO70 exocyst subunit family AT5G52340 77.9 2.8e-187 652.1
Csa06g02722 CCT 1 182 EXO70 exocyst subunit family AT5G52340 80.2 7.8e-81 298.5
Csa06g02721 . 145 631 EXO70 exocyst subunit family AT5G52350 63.5 1.7e-175 612.8
Csa05g02705 . 151 652 EXO70 exocyst subunit family AT5G52350 60.6 5.4e-169 591.3
Csa06g02723 . 145 421 EXO70 exocyst subunit family AT5G52350 60.1 1.2e-88 324.3
Csa06g02722 CCT 1 182 EXO70 exocyst subunit family AT5G52350 64.3 2.0e-62 237.3
Csa01g02542 . 1 630 EXO70 exocyst subunit family AT5G58430 66.5 7.6e-246 846.7
Csa01g02542 . 1 629 EXO70 exocyst subunit family AT1G07000 52.0 2.3e-175 612.5
Csa04g00293 . 60 673 EXO70 exocyst subunit family AT5G13150 52.6 3.1e-173 605.5
Csa05g01620 . 93 705 EXO70 exocyst subunit family AT5G13990 54.3 4.1e-192 668.3
Csa03g02774 . 12 611 EXO70 exocyst subunit family AT1G72470 64.3 1.3e-213 739.6
Csa03g02774 . 9 607 EXO70 exocyst subunit family AT1G54090 62.3 3.9e-210 728.0
Csa03g02774 . 9 608 EXO70 exocyst subunit family AT3G14090 65.1 8.4e-221 763.5
Csa01g03408 . 14 651 EXO70 exocyst subunit family AT5G50380 61.9 5.6e-226 780.8
Csa01g00963 . 1 635 EXO70 exocyst subunit family AT5G50380 61.8 3.1e-224 775.0
Csa02g02314 . 13 683 EXO70 exocyst subunit family AT4G31540 73.1 4.5e-292 1000.3
Csa05g00661 . 58 601 EXO70 exocyst subunit family AT3G55150 51.7 2.2e-152 536.2
Csa05g00661 . 27 601 EXO70 exocyst subunit family AT2G39380 52.0 3.9e-157 552.0
Csa03g03213 . 27 632 EXO70 exocyst subunit family AT3G09520 54.3 4.0e-178 621.7
Csa06g01715 . 36 613 EXO70 exocyst subunit family AT5G59730 50.2 5.9e-153 538.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001818 3 2 3 3 3 2 0 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 2 2 3 3 2 2 2 0 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g01715 Csa_Chr06 FPKM 6.017372 2.015395 9.763824 11.351826 19.931753 19.32023 17.564075 12.862218 11.4534 13.036351