Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01725 ATGAACAAGGGTTTTTGGATGACGAAGGTTCCTGGGCATGAAAATGATGCAAATTCAACTTTTGACAGCCCATCACTCTTAGACATGAAGCGGGCACATCACTGGTTTATAGATGGCTGTGAGACACAGGCCTTCCCCAACAAGAAGCAAGCAATTCAAGCTTCAAATAGTAAAATGACGGGAGTGGTGTCAAATATTAATGTTTTTCCTTGGGAGCAGCATACTCCAAGTTATCAGTCTGTTTCACATCAACTTATCGGTCACTTATTTGGACCTGAATCAGTAAGGTCTACTGACTTTGATCGAGCTAAAACATCTTCTGTAATTTCGGATAATTTGGACCTCAGGAGAAAAGGTATTGAAGTTGAAGACCATTATGGAGAGGGTGCATCTGTTGGGTTGTCTATTTCTCATGGTATGGAGGATCCTGAAACATCTCCTAGCTACGGAAGAATTAGAAAAGTGAAACTCAATCTGGTAAAAGATAATATACATGATCTCCAACCGTGTCATAGAAGTAATTCTAATAGGGAAGATGGTGGTCAACTCACCATGGATAGTTATTATAAGGAAATTGAAACGGGTCTTGTATCTGTGGGATCAGCCTATATTAAGGAGGATGACAGTTTCAGTTTGATGAATCAAACCTCCAACAATGGGGATCACCATATTAGGTTTCTAGGTCATAGTGGGAAGATAGATGACAATGTTGTCTCCATTGGTGATGATTATGGTAAGCGGGATGCAAATATAATCTCATTTGATGGATTTCCTGATGATCAAGATATTGTATCCTTAGGCAGGACACTTGGTAGCCATGACTCAACATTTTATGAACCTTCATTCCAAGCATCTGAAGCTGATGGTGTCCCAGAGTTGGAATCATCAAGTTTCGATGTACCTGCAAGCAGTTCTCAGATAACGAAGCAAAAGCCTGATATAACGCTGAAGAATAGACCAGAATACAAAATGAGGAAAGAAGCTCCTAACAGCTTTCCTTCAAATGTTAGAAGTTTGATATCAACTGGGATGCTCGATGGTGTTCCTGTTAAGTATGTTTCCGTAACCAGAGAGGAGCTTCGTGGAATAATAAAGGGATCTGGTTATCTTTGTGGATGTCAATCTTGCAACTTTTCCAAGATGCTTAATGCATATGAGTTTGAGCGGCACGCTGGCTGCAAAACAAAACACCCAAATAATCATATATACTTTGAGAATGGGAAAACTATTTACCAGATCGTACAAGAATTAAGAAGCACTCCTGAGAGCTTGTTGTTTGATACAATCCAAACTATATTTGGTGCACCAATCAATCAGAAATCTTTTCGGATTTGGAAGGAATCATTTCAAGCAGCAACTCGCGAGCTTCAACGCATATATGGCAAGGATGAACTTAACCTTTAG 1404 39.74 MNKGFWMTKVPGHENDANSTFDSPSLLDMKRAHHWFIDGCETQAFPNKKQAIQASNSKMTGVVSNINVFPWEQHTPSYQSVSHQLIGHLFGPESVRSTDFDRAKTSSVISDNLDLRRKGIEVEDHYGEGASVGLSISHGMEDPETSPSYGRIRKVKLNLVKDNIHDLQPCHRSNSNREDGGQLTMDSYYKEIETGLVSVGSAYIKEDDSFSLMNQTSNNGDHHIRFLGHSGKIDDNVVSIGDDYGKRDANIISFDGFPDDQDIVSLGRTLGSHDSTFYEPSFQASEADGVPELESSSFDVPASSSQITKQKPDITLKNRPEYKMRKEAPNSFPSNVRSLISTGMLDGVPVKYVSVTREELRGIIKGSGYLCGCQSCNFSKMLNAYEFERHAGCKTKHPNNHIYFENGKTIYQIVQELRSTPESLLFDTIQTIFGAPINQKSFRIWKESFQAATRELQRIYGKDELNL* 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15180723 15183942 + CsaV3_6G022200.1 Csa06g01725 533352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01725 467 Pfam Tify domain binding domain 362 417 IPR032308 -
Csa06g01725 467 PANTHER AUTOIMMUNE REGULATOR 2 467 - -
Csa06g01725 467 PANTHER DNA-BINDING PROTEIN 2 467 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01725 Csa-Chr6:15180723 Csa03g03331 Csa-Chr3:30240795 6.67E-06 dispersed
Csa06g01725 Csa-Chr6:15180723 Csa05g00695 Csa-Chr5:4636359 9.10E-39 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01725 - - csv:101211282 955.666