Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01741 ATGGCTTTCTGGTGGACTCTGATTGTTCTTGGATTTGCTTACGCGATCTGTAGGTTGCTCTTGATGCTTATCCCTCCGAATGTGCCTTCAATCGAAGTTGACGCATCTGACGTTATGGACGACGGGAATCAAACGCAGGAGAATAGCTACATCTACATTCCACCTAGGACAAAGACGCAACAGCAGGACAAGAGAGTCCAGTGTTATGAACCTGCAACTATGAAATACCTTGGCTATTTTCCTGCATTGTCACGAGACGAGGTCAAGGAGCGTGTTGCTTCAGCCAGGAAAGCGCAGAAAGAATGGGCCAAAAGTAGCTTCAAGCAAAGGCGTTTGCTTTTACGGATCCTTTTGAAGTACATAATTGAAAATCAAGAGCTCATTTGCGAGATCTCCTCCCGTGACACCGGAAAAACAATAGTTGATGCTAATATGGGAGAAGTAATGGCGACATGTGAAAAGATTACTTGGCTTCTTTCAGAGGGTGAGAAATGGCTGAAGCCTGAGAGCCGATCATGTGGAAGGGCAACACTTCACAAGAAAGCCCGAGTAGAATTTCACCCCCTTGGAGTTGTTGGGGCGATAGTCCCATGGAACTATCCATTCCATAACATTTTCAATCCAGTGCTTGCAGCAGTCTTTGCAGGAAACGGCATTGTGGTTAAGGTTTCAGAACATGCAAGTTGGTCAGGATGCTTTTATGTTAGGATTATCCATGCTGCTCTTGCTGCCGTTGGAGCTCCTGAGAGTTTGGTTGATGTGATAACAGGGTTTGCTGAAACAGGTGAAGCGCTAGTATCTTCAGTAGACAAAATGATATTCGTTGGATCAACTGGTGTGGGTAGGATGATAATGAAAAGTGCTGCGGAGACACTTATTCCCGTCACTCTTGAGTTGGGTGGAAAGGATGCATTTATCGTGTGTGAGGATATAGATCTGGATCATGTTGTAGACATTGCTCTCAGGGCTTCTATTACATCAAGTGGACATAATTGTACTGGAGCCGAGAGATTTTATGTCCACAAGAACATTTATTCTTCATTTGTGGATAAAATATCAGAACGTGTAAAGGATATTACAGTTGGTCCACCGTCAGCTGGGAAATATGATATGGGTGCCATCTGTACGCAAGAGCAATCTGAAAAACTTCAAAGCCTTGTAAATGATGCCTTAGACAGGGGGGCAAAAATTGTTGCTCGTGGAACTTTTGGACATTTACCTGAAGGTGCCGTTGATCAATATTTCCCACCTACCGTTATTGTTGATGTCAACCATACAATGAAGTTAATGCAAGAGGAGGCATTTGGACCAATTCTGCCTATAATGAAATTCAGCACAGATGGTGAGGCCGTGAAGCTTGCAAATGACTCGAGATTTGGACTTGGATGTGCTGTCTTTTCTGGCAGTCAGGATCGTGCAAGGAACATTGCTTGGCAGATTCATTCGGGAAGTGTTGCAATCAATGACTTCGCTACAAATTATTTGTGCCAGTCCTTGCCATTTGGTGGCGTAAAAGAGAGTGGATTCGGTCGATTTGCGGGCGTTGAAGGATTACGAGCTTGTTGTCTTGTCAAAGCAGTAGTTGAGGATAGGTGGTGGCCATTCCTTTATACCAAGCACCCTAAGCTTCTTACGTATCCTGTTGCAGACAACGCTTTTGAGTTTCAAATGTCGCTTGTTGAAGCGACGTACGGGCTGAACATATGGCATCGATTAACAGCATTGGTCAATGTTCTGAAGATGCTGTCAGAGCATAACACTCTGACTAGAAACAATCCTAACATTAATGGTCGACGTAAGAGAAATGATTGA 1812 44.09 MAFWWTLIVLGFAYAICRLLLMLIPPNVPSIEVDASDVMDDGNQTQENSYIYIPPRTKTQQQDKRVQCYEPATMKYLGYFPALSRDEVKERVASARKAQKEWAKSSFKQRRLLLRILLKYIIENQELICEISSRDTGKTIVDANMGEVMATCEKITWLLSEGEKWLKPESRSCGRATLHKKARVEFHPLGVVGAIVPWNYPFHNIFNPVLAAVFAGNGIVVKVSEHASWSGCFYVRIIHAALAAVGAPESLVDVITGFAETGEALVSSVDKMIFVGSTGVGRMIMKSAAETLIPVTLELGGKDAFIVCEDIDLDHVVDIALRASITSSGHNCTGAERFYVHKNIYSSFVDKISERVKDITVGPPSAGKYDMGAICTQEQSEKLQSLVNDALDRGAKIVARGTFGHLPEGAVDQYFPPTVIVDVNHTMKLMQEEAFGPILPIMKFSTDGEAVKLANDSRFGLGCAVFSGSQDRARNIAWQIHSGSVAINDFATNYLCQSLPFGGVKESGFGRFAGVEGLRACCLVKAVVEDRWWPFLYTKHPKLLTYPVADNAFEFQMSLVEATYGLNIWHRLTALVNVLKMLSEHNTLTRNNPNINGRRKRND* 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15307392 15314978 + CsaV3_6G022360.1 Csa06g01741 533368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01741 603 PANTHER ALDEHYDE DEHYDROGENASE-LIKE PROTEIN YHR039C-RELATED 1 562 - -
Csa06g01741 603 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 297 304 IPR029510 GO:0016491
Csa06g01741 603 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 1 562 - -
Csa06g01741 603 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 65 525 IPR016162 GO:0016491
Csa06g01741 603 Pfam Aldehyde dehydrogenase family 61 527 IPR015590 GO:0016491
Csa06g01741 603 SUPERFAMILY ALDH-like 50 529 IPR016161 GO:0016491
Csa06g01741 603 CDD ALDH_F15-22 69 531 - -
Csa06g01741 603 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 305 500 IPR016163 GO:0016620
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01789 Csa-Chr4:17543635 Csa06g01741 Csa-Chr6:15307392 8.53E-44 dispersed
Csa07g02347 Csa-Chr7:21717182 Csa06g01741 Csa-Chr6:15307392 2.02E-29 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01741 - - csv:101209796 1214.52