Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01743 ATGGGGAGTAGGAGTATTGACAATCTCTCTATGGTTGATGAAATTCGATGTTCCCATGGTGGAACATTCTTGTATGACCTTGGCCATCCTCTTCTCAATCGCGTTGCTGATAGCTTCGTCAAGGCTGCTGGGATAGGTGCATTGCAATCTGTATCTCGAGAGGCTTATTTTACGGTTGCAGGAAGTGTTGATTCGAACATTGCACCACCGCCTGAATTATCGAGTATGAGAAAGCAACGTTTTCCAGGTCTTAAAGGTGAAACCAACAAAGAGTCCCTTGAAGCCATGGTGAAGAGCGTGGGAAAAGAATCTATCCAATGGGGATTAGCTGCTGGTGTTTACTCTGGTCTCACGTATGGTTTAAAGGAGGCTCGTGGAGCACACGACTGGAAGAATAGTGCAATCGCAGGTGCGGTGACGGGCGTAGCCGTAGCACTCACAGCAGACAAGTCTTCTCACGAGCATATCGTACAATATGCAATCACCGGTGCTGCTATGTCAACAGCTGCAAATATATTTGCGGGCATATTTTAG 534 46.82 MGSRSIDNLSMVDEIRCSHGGTFLYDLGHPLLNRVADSFVKAAGIGALQSVSREAYFTVAGSVDSNIAPPPELSSMRKQRFPGLKGETNKESLEAMVKSVGKESIQWGLAAGVYSGLTYGLKEARGAHDWKNSAIAGAVTGVAVALTADKSSHEHIVQYAITGAAMSTAANIFAGIF* 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15318197 15321107 - CsaV3_6G022380.1 Csa06g01743 533370

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01743 177 PANTHER OUTER ENVELOPE PORE PROTEIN 16-2, CHLOROPLASTIC 8 177 - -
Csa06g01743 177 Pfam Tim17/Tim22/Tim23/Pmp24 family 32 167 - -
Csa06g01743 177 PANTHER TIM23 8 177 IPR045238 GO:0022857
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01743 - - - csv:101215622 340.117
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02409 Csa-Chr1:21420566 Csa06g01743 Csa-Chr6:15318197 1.12E-20 dispersed
Csa07g01839 Csa-Chr7:18532886 Csa06g01743 Csa-Chr6:15318197 2.22E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g87 Blo01g00050 . . Bda08g00315 . Bpe14g01102 . . . Cmo17g00354 . . . . . . . . . . . . . . . . . . . . . . Cone15ag0736 . . . Csa06g01743 Chy11g01563 . Blo02g00480 . . Bda13g00213 Bpe05g00813 . Bma02g00926 . Sed04g2386 . . Cma08g01271 Cma17g00364 Car08g01141 Car17g00337 Cpe12g00316 Cpe17g00062 Bhi12g01922 Tan06g2747 Cmetu11g0232 Lac11g0928 Hepe03g0051 . Lcy12g0799 . . . . . . . Lsi09g01484 . . Cme11g02074
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007863 2 1 2 1 2 1 2 1 1 1 0 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g01743 Csa_Chr06 FPKM 3.916157 3.608577 6.612793 5.659153 8.223897 6.449142 6.55781 14.028175 12.784237 14.590821