Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01749 ATGAGAAGATTAAAACAGCTTACTTCATCCATCAAACATTGGAGCAATCTCAGAAAAGGGAAAGTTGAGGAGAACAAACAAATATGGATAAAAGAGATTGAAGCTATCAATTTATTAGAAGCTGGAGGGAACATCTCTAAAATTCAGTGTAATCGTAGAATTGCTCTCAAAGCAGAACTTTCCCAAGCTACACACGTTGAATCACAAATTTGGGCACAAAAGTGTAAAAGATTATGGAATTTGGAGGGGATGAGAACTCTTATTTTCACACAATCTGTTCAGCGAGACAAAGAAGAAGCTTCATTTCTAATATCGTTAGCGAATCGGGGCTTATCTGTACAAAAGACGAAGACATTGAGAAAACCTTCATTGAACACTTCAACAATATTTATTCTGCCACCGAAAAAGAACAGTCCTACAAGTTCGATGCAAGCGAGTTTCCTGATCGATGTTGGAGACAAAGCACAAGTTTCCATAATCTCATTTTCCGCCACACGACCTTCCCTCACATCCCATCGCGGCTCTTACTTCTTCCGAATCACCCAAGCTGATTCCTTTCAAGTGAAAGCCATTGCAGCCATTGTCAAGGCTTTCAAATGGAGAAAAATTGTCTCAATCTACGTCGACAACGAGTTCGGCGACGGTATCATACCTTTCCTTGTCGATGCTTTACAAGAGGTAGATGCAAATGTGTCATACCAAAGCGTCATCTCTCTTACCGCCACCAACGACGAGATTGAACTCAAACTTTCAAATTTAATGAATATGCAAACTCGAGTGTTTGTGGTGCACATGTTACCTCCCCTTGCTTCAAGACTCTTCATTGTGGCAAAAAAGAAGGGAATGATGGGTCGTGGCTACACTTGGATAGTAATAGATGCTATCACAAACGAATTTAATTCGAAACCCTTAATTTTTTATCAATCAATGCAAGGAGTTTTGGGAATAAGAAATTATGTCCCAGGAATCAAACGCCTTGAATCCTTTAAACGTGATTGGCAAAAGAGATTTCTAAGGTACTATCCAACCATAGAAGAAATTCCTGAGCTCAACGTGTTTGGTTTATGGGCTTATGACGCTGCTTGGCGCTAG 1092 40.02 MRRLKQLTSSIKHWSNLRKGKVEENKQIWIKEIEAINLLEAGGNISKIQCNRRIALKAELSQATHVESQIWAQKCKRLWNLEGMRTLIFTQSVQRDKEEASFLISLANRGLSVQKTKTLRKPSLNTSTIFILPPKKNSPTSSMQASFLIDVGDKAQVSIISFSATRPSLTSHRGSYFFRITQADSFQVKAIAAIVKAFKWRKIVSIYVDNEFGDGIIPFLVDALQEVDANVSYQSVISLTATNDEIELKLSNLMNMQTRVFVVHMLPPLASRLFIVAKKKGMMGRGYTWIVIDAITNEFNSKPLIFYQSMQGVLGIRNYVPGIKRLESFKRDWQKRFLRYYPTIEEIPELNVFGLWAYDAAWR* 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15373841 15377050 - CsaV3_6G022440.1 Csa06g01749 533376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01749 363 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 138 362 - -
Csa06g01749 363 SUPERFAMILY Periplasmic binding protein-like I 139 362 IPR028082 -
Csa06g01749 363 Pfam Receptor family ligand binding region 139 362 IPR001828 -
Csa06g01749 363 Gene3D - 185 352 - -
Csa06g01749 363 PANTHER GLUTAMATE RECEPTOR 138 362 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01749 Csa-Chr6:15373841 Csa02g02450 Csa-Chr2:21600847 1.31E-145 dispersed
Csa06g01746 Csa-Chr6:15363664 Csa06g01749 Csa-Chr6:15373841 6.12E-30 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01749 K05387 - csv:101203550 406.371