Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01750 ATGGCGAAGTCGAAGAATCACACAGCTCACAATCAGTCCCACAAAGCCCATAAGAACGGCATCAAGAAACCAAGGAAGCACCGCCACACTTCCACCAAAGGGATGGACCCGAAGTTCCTTAGGAACCAGAGGTACGCGAAGAAACACAATACCAAGAGTGGGGAAAATGCTTCTGGGGAAGAGTGCAAGGGCATGAGACACTCAGTTCCATTTAAAACTGTAAAATTCGGTGGAAGCCGGAAAGGAAGGAGAAGGCCAAAGGCGACAAAGGTGGTACCAGTGGAGATGAAAATAAGAGCTACTGCTATGGATTCTAGAAGCAAAACTTTAGAGATTCTGAGTTTGGCACACAGGGCCATGACTCTGCTTCCACTGCTTCAGTTCTTTGGAGACGTTCCAGCCCTCGTCACTCAAGGAGTGACAGGAAAACCTTCTACAGTAGAATTTGCTAATGTCCAACAACAACAAGGTCAACAGTTTGCACCACAAGTCAGCCAGACTCCAGTACAAAATCTTTCTAATGGCCAGCCCAATCGATTAAACAGAAATGCAACATGGCATAGAGAAACTTCGGCCACCCATCCTGCATCATTCAACATGAAGAAATTCAATTCGTTCATTGATAGCAACAACCTTATTGACCCACCTCTCACAAATGCTACATATACTTAA 672 45.39 MAKSKNHTAHNQSHKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNTKSGENASGEECKGMRHSVPFKTVKFGGSRKGRRRPKATKVVPVEMKIRATAMDSRSKTLEILSLAHRAMTLLPLLQFFGDVPALVTQGVTGKPSTVEFANVQQQQGQQFAPQVSQTPVQNLSNGQPNRLNRNATWHRETSATHPASFNMKKFNSFIDSNNLIDPPLTNATYT* 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15377283 15386198 - CsaV3_6G022450.1 Csa06g01750 533377

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01750 223 MobiDBLite consensus disorder prediction 40 66 - -
Csa06g01750 223 Pfam Ribosomal L29e protein family 3 42 IPR002673 GO:0003735|GO:0005840|GO:0006412
Csa06g01750 223 Gene3D - 1 63 - -
Csa06g01750 223 MobiDBLite consensus disorder prediction 1 32 - -
Csa06g01750 223 MobiDBLite consensus disorder prediction 158 178 - -
Csa06g01750 223 PANTHER 60S RIBOSOMAL PROTEIN L29 1 61 - -
Csa06g01750 223 PANTHER 60S RIBOSOMAL PROTEIN L29 1 61 IPR002673 GO:0003735|GO:0005840|GO:0006412
Csa06g01750 223 MobiDBLite consensus disorder prediction 1 66 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01750 K02905 RP-L29e, RPL29; large subunit ribosomal protein L29e - csv:101209059 132.494
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g03133 Csa-Chr5:31226772 Csa06g01750 Csa-Chr6:15377283 8.93E-17 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g90 Blo01g00052 Blo12g00087 Bda03g01171 Bda08g00313 Bpe04g01109 . Bma04g01135 Bma05g01016 Cmo08g01238 Cmo17g00351 . . . . . . . . . . . . . . Cla06g00437 . . . . . . . Cone15ag0738 Cone7ag0107 Cone4ag0110 . Csa06g01750 Chy11g01560 . . . . . Bpe05g00815 . . . Sed09g0275 . . Cma08g01268 Cma17g00361 Car08g01138 Car17g00333 Cpe12g00313 Cpe17g00059 Bhi12g01917 Tan06g2743 Cmetu11g2549 . Hepe03g0595 . Lcy12g0792 . . . . . . . Lsi09g01481 . . Cme11g02071
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003097 2 2 2 2 2 0 3 0 0 2 2 0 3 2 1 2 0 3 2 0 1 2 3 0 2 2 2 3 3 2 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g01750 Csa_Chr06 FPKM 7.542869 6.32569 14.002937 14.514841 8.138191 5.433521 9.358458 2.859575 3.763108 4.226123