Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01752 ATGTCGCTGTCCATGAAAGCTGACGTTCAAGGAAGCCTTGTTGGCTCGGAGATTCATGGCTTCCATACATTGCAAGATTTGGATGTTGAAAACATCAGGGAGGAAGCAAGTGCAAGATGGCTTCGTCCAAATGAAATCCATGCGATACTGTGTAACTACAAATATTTTACCATCCACGTCAAACCAGTGAACTTGCCCAAAAGTGGAACCATTGTATTATTTGACCGCAAGATGCTTAGGAATTTTCGCAAAGATGGACATAATTGGAAGAAAAAAAAGGATGGAAAGACAGTAAAAGAAGCACATGAACACCTAAAAGTCGGTAATGTAGAAAGGATACATGTATACTATGCCCATGGACTAGATAGCCCAACCTTTGTTCGCCGGTGTTATTGGCTCCTAGATAAGACCCTTGAACACATTGTCCTCGTTCATTACCGTGAAACACAAGAGAATTCTCCATCCACATCGTTGAACTCAAATTCTGGTTCTGTCTCTAACCCATCAACTCCGTGGCTTTTATCAGAGGAACTTGATTCCAAGGCTACTCATGTCTATTCTGTTGGTGAAAATGAATTGTCAGAGCCTAGTGACACTACAACAGTCATGACTCATGAACAGCGGCTTCATGAGATCAACACACTTGAGTGGGATGACCTTCTTGTGAAGGACGAGCCTTTCAAACCTGCCATTCATAAAGGAGACAAACTTTCATGCTTTGACCAACAGAACCAAGTCCCAATAAACGCGACCAGCAATTTGTTGGGGGAGATGTCTTCATTTAGTAATCCAGTTGAGTCAACTGGGAGGGCCAACGGCAATATCAGTTTCACCGGAAGTGCCAATCTGTTGTTAGGTGGTCAAACAAATTTGAATGTAGAGAAGAGGGAATCCATTGCAATTAATTCTACGGACAATTTGTTAGATGAGAGACTGCAAAGTCAGGACAGCTTTGGGCGATGGATAAATGAAGTTATCATTGAGTCTCCTGGTTCAGTCATTGATCCTGCTATTGAACCATCCATTTCATATGTTCACAATTCCTATCGTGATTCAACATTATATCACAGTCAAACTTTGGCTACGGAGCAAATTTTTAACATAACTGATGTCTCACCTTCATGGGCCTTTTCAACAGAAAAAACAAAGATTCTAATTATTGGGTATTTTCACAATGACTTTGTACATCTAGCAAAGTCCAACTTATTGGTTGTATGTGGTGATACCAGTGTTAATGTTGATTTTGTTCAACCTGGAGTTTATCGCTGTCTAGTACCACCACATGCACCTGGACTAGTACATTTATATGTGAGCGTAGATGGCCACAAACCTATTAGTCAAGCTCTAAATTTCGAGTATCGGGCACCAAATTTAGAAGTGCCTGTAGTTGCTTCAGAACAGAGCCAAAAGTGGGAAGAGTTCCAAATCCAGATGCGGCTTGCTCATATGTTGTTCTCTACATCCAAGATTCTGAGCATCATTTCAACTAAATTGTTGCCCACTGCCCTGCAGGAGGCTAAGAAACTTGCTGTAAAAACTGCCGACATTTCTGATAGTTGGATTTATTTGTTAAAGTCAATTACAGAAAATAGAACTCCATTTCAACAAGCAAGGGAAGGGGTTCTTGAGATCGTGCTGAGAAGCAGGTTAAGGGAATGGCTGATAGAAAGAGTTGCTGAAGGCGCAAAGAAAAGCACTGAGTTTGATGTAAATGGTCAAGGAGTAATCCATTTGTGTGCAATATTGGGATATACCTGGGCTGTACATCTATTTGACTGGGCGGGTTTGTCAATAAACTTCCGAGATAAATTTGGATGGACAGCTCTTCACTGGGCAGCTTATTATGGAAGGGAGAGAATGGTTGCCGTTCTTCTATCAGCAGGGGCAAAGCCAAACTTGGTCACTGATCCCTCATCAAAGAACCCTCTGGGATGTACAGCTGCAGATCTTGCATCTATGAATGGTTATGATGGCTTAGCTGCATATCTTTCTGAAAAGGCTTTGGTATCACACTTCAAAGAGATGAGCTTGGCTGGAAATGTCAGTGGCTCGTTGGATACTAGTAGTACAATAACTGATACCTCTGATTGCATCAGCGAGGAGCAGATGTATATGAAAGAAACATTAGCAGCTTACCGAACAGCAGCTGATGCAGCATCACGTATACAAGCTGCATTTCGTGAACATTCTTTAAAACAACGATCTGATAGAATTGAATTATCCTCCCCAGAAGATGAGGCTCGTAGTATTATTGCAGCCATGAAAATTCAACATGCCTACCGCAATTTTGAGACACGAAAAAAAATGGCAGCTGCTGCTCGTATCCAATACAGATTCCGTACTTGGAAGATCCGCAAAGACTTCCTTAATATGCGTCGTCAAACTATTAGAATTCAGGCTGCATTTAGAGGCTTCCAAGTACGAAGGCAGTATCGCAAGATTGTTTGGTCAGTGGGTGTACTTGAGAAAGCTATACTGCGCTGGCGTCTTAAGAGAAAAGGTTTCCGTGGGCTTCAAGTTGCACCTACTGAAATGGTGGAAAAGCAGCAAAGTGACGTAGAAGAGGACTTCTACCTTGTATCTCAAAAACAAGCAGAAGAGCGAGTTGAGAGAGCTGTTGTTCGTGTTCAGGCTATGTTTCGATCAAAGAAAGCACAAGAAGAGTATCGTAGGATGAGGTTAACTTGTGATGAAGCAGCGTTGGAATATGAAGTACTTTCACATCCTGTGTATGGCAATGATTAA 2745 41.82 MSLSMKADVQGSLVGSEIHGFHTLQDLDVENIREEASARWLRPNEIHAILCNYKYFTIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHGLDSPTFVRRCYWLLDKTLEHIVLVHYRETQENSPSTSLNSNSGSVSNPSTPWLLSEELDSKATHVYSVGENELSEPSDTTTVMTHEQRLHEINTLEWDDLLVKDEPFKPAIHKGDKLSCFDQQNQVPINATSNLLGEMSSFSNPVESTGRANGNISFTGSANLLLGGQTNLNVEKRESIAINSTDNLLDERLQSQDSFGRWINEVIIESPGSVIDPAIEPSISYVHNSYRDSTLYHSQTLATEQIFNITDVSPSWAFSTEKTKILIIGYFHNDFVHLAKSNLLVVCGDTSVNVDFVQPGVYRCLVPPHAPGLVHLYVSVDGHKPISQALNFEYRAPNLEVPVVASEQSQKWEEFQIQMRLAHMLFSTSKILSIISTKLLPTALQEAKKLAVKTADISDSWIYLLKSITENRTPFQQAREGVLEIVLRSRLREWLIERVAEGAKKSTEFDVNGQGVIHLCAILGYTWAVHLFDWAGLSINFRDKFGWTALHWAAYYGRERMVAVLLSAGAKPNLVTDPSSKNPLGCTAADLASMNGYDGLAAYLSEKALVSHFKEMSLAGNVSGSLDTSSTITDTSDCISEEQMYMKETLAAYRTAADAASRIQAAFREHSLKQRSDRIELSSPEDEARSIIAAMKIQHAYRNFETRKKMAAAARIQYRFRTWKIRKDFLNMRRQTIRIQAAFRGFQVRRQYRKIVWSVGVLEKAILRWRLKRKGFRGLQVAPTEMVEKQQSDVEEDFYLVSQKQAEERVERAVVRVQAMFRSKKAQEEYRRMRLTCDEAALEYEVLSHPVYGND* 915
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15400953 15413160 - CsaV3_6G022470.1 Csa06g01752 533379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01752 914 Gene3D Immunoglobulins 361 457 IPR013783 -
Csa06g01752 914 Gene3D - 769 815 - -
Csa06g01752 914 CDD IPT 368 454 - -
Csa06g01752 914 ProSiteProfiles CG-1 DNA-binding domain profile. 29 155 IPR005559 GO:0003677
Csa06g01752 914 SMART ANK_2a 604 633 IPR002110 GO:0005515
Csa06g01752 914 SMART ANK_2a 643 672 IPR002110 GO:0005515
Csa06g01752 914 Coils Coil 882 902 - -
Csa06g01752 914 SUPERFAMILY E set domains 367 454 IPR014756 -
Csa06g01752 914 Gene3D - 502 667 IPR036770 -
Csa06g01752 914 ProSiteProfiles IQ motif profile. 768 795 IPR000048 GO:0005515
Csa06g01752 914 Pfam IPT/TIG domain 368 453 IPR002909 -
Csa06g01752 914 Pfam CG-1 domain 35 148 IPR005559 GO:0003677
Csa06g01752 914 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 20 908 - -
Csa06g01752 914 Pfam IQ calmodulin-binding motif 793 812 IPR000048 GO:0005515
Csa06g01752 914 ProSiteProfiles Ankyrin repeat profile. 604 636 IPR002110 GO:0005515
Csa06g01752 914 SMART iq_5 790 812 IPR000048 GO:0005515
Csa06g01752 914 SMART iq_5 868 890 IPR000048 GO:0005515
Csa06g01752 914 SMART iq_5 767 789 IPR000048 GO:0005515
Csa06g01752 914 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 713 818 IPR027417 -
Csa06g01752 914 Pfam Ankyrin repeats (3 copies) 553 633 IPR002110 GO:0005515
Csa06g01752 914 ProSiteProfiles Ankyrin repeat region circular profile. 604 632 - -
Csa06g01752 914 SUPERFAMILY Ankyrin repeat 561 666 IPR036770 -
Csa06g01752 914 ProSiteProfiles IQ motif profile. 870 898 IPR000048 GO:0005515
Csa06g01752 914 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6 20 908 - -
Csa06g01752 914 ProSiteProfiles IQ motif profile. 791 815 IPR000048 GO:0005515
Csa06g01752 914 ProSiteProfiles IQ motif profile. 715 744 IPR000048 GO:0005515
Csa06g01752 914 SMART CG_1_2 32 150 IPR005559 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01752 Csa-Chr6:15400953 Csa07g00551 Csa-Chr7:4030504 1.74E-40 dispersed
Csa06g01752 Csa-Chr6:15400953 Csa06g00984 Csa-Chr6:7994028 1.55E-08 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32034 PF03859 CG-1 3.40E-45 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01752 K21596 - csv:101211298 1773.44