Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01752 ATGTCGCTGTCCATGAAAGCTGACGTTCAAGGAAGCCTTGTTGGCTCGGAGATTCATGGCTTCCATACATTGCAAGATTTGGATGTTGAAAACATCAGGGAGGAAGCAAGTGCAAGATGGCTTCGTCCAAATGAAATCCATGCGATACTGTGTAACTACAAATATTTTACCATCCACGTCAAACCAGTGAACTTGCCCAAAAGTGGAACCATTGTATTATTTGACCGCAAGATGCTTAGGAATTTTCGCAAAGATGGACATAATTGGAAGAAAAAAAAGGATGGAAAGACAGTAAAAGAAGCACATGAACACCTAAAAGTCGGTAATGTAGAAAGGATACATGTATACTATGCCCATGGACTAGATAGCCCAACCTTTGTTCGCCGGTGTTATTGGCTCCTAGATAAGACCCTTGAACACATTGTCCTCGTTCATTACCGTGAAACACAAGAGAATTCTCCATCCACATCGTTGAACTCAAATTCTGGTTCTGTCTCTAACCCATCAACTCCGTGGCTTTTATCAGAGGAACTTGATTCCAAGGCTACTCATGTCTATTCTGTTGGTGAAAATGAATTGTCAGAGCCTAGTGACACTACAACAGTCATGACTCATGAACAGCGGCTTCATGAGATCAACACACTTGAGTGGGATGACCTTCTTGTGAAGGACGAGCCTTTCAAACCTGCCATTCATAAAGGAGACAAACTTTCATGCTTTGACCAACAGAACCAAGTCCCAATAAACGCGACCAGCAATTTGTTGGGGGAGATGTCTTCATTTAGTAATCCAGTTGAGTCAACTGGGAGGGCCAACGGCAATATCAGTTTCACCGGAAGTGCCAATCTGTTGTTAGGTGGTCAAACAAATTTGAATGTAGAGAAGAGGGAATCCATTGCAATTAATTCTACGGACAATTTGTTAGATGAGAGACTGCAAAGTCAGGACAGCTTTGGGCGATGGATAAATGAAGTTATCATTGAGTCTCCTGGTTCAGTCATTGATCCTGCTATTGAACCATCCATTTCATATGTTCACAATTCCTATCGTGATTCAACATTATATCACAGTCAAACTTTGGCTACGGAGCAAATTTTTAACATAACTGATGTCTCACCTTCATGGGCCTTTTCAACAGAAAAAACAAAGATTCTAATTATTGGGTATTTTCACAATGACTTTGTACATCTAGCAAAGTCCAACTTATTGGTTGTATGTGGTGATACCAGTGTTAATGTTGATTTTGTTCAACCTGGAGTTTATCGCTGTCTAGTACCACCACATGCACCTGGACTAGTACATTTATATGTGAGCGTAGATGGCCACAAACCTATTAGTCAAGCTCTAAATTTCGAGTATCGGGCACCAAATTTAGAAGTGCCTGTAGTTGCTTCAGAACAGAGCCAAAAGTGGGAAGAGTTCCAAATCCAGATGCGGCTTGCTCATATGTTGTTCTCTACATCCAAGATTCTGAGCATCATTTCAACTAAATTGTTGCCCACTGCCCTGCAGGAGGCTAAGAAACTTGCTGTAAAAACTGCCGACATTTCTGATAGTTGGATTTATTTGTTAAAGTCAATTACAGAAAATAGAACTCCATTTCAACAAGCAAGGGAAGGGGTTCTTGAGATCGTGCTGAGAAGCAGGTTAAGGGAATGGCTGATAGAAAGAGTTGCTGAAGGCGCAAAGAAAAGCACTGAGTTTGATGTAAATGGTCAAGGAGTAATCCATTTGTGTGCAATATTGGGATATACCTGGGCTGTACATCTATTTGACTGGGCGGGTTTGTCAATAAACTTCCGAGATAAATTTGGATGGACAGCTCTTCACTGGGCAGCTTATTATGGAAGGGAGAGAATGGTTGCCGTTCTTCTATCAGCAGGGGCAAAGCCAAACTTGGTCACTGATCCCTCATCAAAGAACCCTCTGGGATGTACAGCTGCAGATCTTGCATCTATGAATGGTTATGATGGCTTAGCTGCATATCTTTCTGAAAAGGCTTTGGTATCACACTTCAAAGAGATGAGCTTGGCTGGAAATGTCAGTGGCTCGTTGGATACTAGTAGTACAATAACTGATACCTCTGATTGCATCAGCGAGGAGCAGATGTATATGAAAGAAACATTAGCAGCTTACCGAACAGCAGCTGATGCAGCATCACGTATACAAGCTGCATTTCGTGAACATTCTTTAAAACAACGATCTGATAGAATTGAATTATCCTCCCCAGAAGATGAGGCTCGTAGTATTATTGCAGCCATGAAAATTCAACATGCCTACCGCAATTTTGAGACACGAAAAAAAATGGCAGCTGCTGCTCGTATCCAATACAGATTCCGTACTTGGAAGATCCGCAAAGACTTCCTTAATATGCGTCGTCAAACTATTAGAATTCAGGCTGCATTTAGAGGCTTCCAAGTACGAAGGCAGTATCGCAAGATTGTTTGGTCAGTGGGTGTACTTGAGAAAGCTATACTGCGCTGGCGTCTTAAGAGAAAAGGTTTCCGTGGGCTTCAAGTTGCACCTACTGAAATGGTGGAAAAGCAGCAAAGTGACGTAGAAGAGGACTTCTACCTTGTATCTCAAAAACAAGCAGAAGAGCGAGTTGAGAGAGCTGTTGTTCGTGTTCAGGCTATGTTTCGATCAAAGAAAGCACAAGAAGAGTATCGTAGGATGAGGTTAACTTGTGATGAAGCAGCGTTGGAATATGAAGTACTTTCACATCCTGTGTATGGCAATGATTAA 2745 41.82 MSLSMKADVQGSLVGSEIHGFHTLQDLDVENIREEASARWLRPNEIHAILCNYKYFTIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHGLDSPTFVRRCYWLLDKTLEHIVLVHYRETQENSPSTSLNSNSGSVSNPSTPWLLSEELDSKATHVYSVGENELSEPSDTTTVMTHEQRLHEINTLEWDDLLVKDEPFKPAIHKGDKLSCFDQQNQVPINATSNLLGEMSSFSNPVESTGRANGNISFTGSANLLLGGQTNLNVEKRESIAINSTDNLLDERLQSQDSFGRWINEVIIESPGSVIDPAIEPSISYVHNSYRDSTLYHSQTLATEQIFNITDVSPSWAFSTEKTKILIIGYFHNDFVHLAKSNLLVVCGDTSVNVDFVQPGVYRCLVPPHAPGLVHLYVSVDGHKPISQALNFEYRAPNLEVPVVASEQSQKWEEFQIQMRLAHMLFSTSKILSIISTKLLPTALQEAKKLAVKTADISDSWIYLLKSITENRTPFQQAREGVLEIVLRSRLREWLIERVAEGAKKSTEFDVNGQGVIHLCAILGYTWAVHLFDWAGLSINFRDKFGWTALHWAAYYGRERMVAVLLSAGAKPNLVTDPSSKNPLGCTAADLASMNGYDGLAAYLSEKALVSHFKEMSLAGNVSGSLDTSSTITDTSDCISEEQMYMKETLAAYRTAADAASRIQAAFREHSLKQRSDRIELSSPEDEARSIIAAMKIQHAYRNFETRKKMAAAARIQYRFRTWKIRKDFLNMRRQTIRIQAAFRGFQVRRQYRKIVWSVGVLEKAILRWRLKRKGFRGLQVAPTEMVEKQQSDVEEDFYLVSQKQAEERVERAVVRVQAMFRSKKAQEEYRRMRLTCDEAALEYEVLSHPVYGND* 915
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15400953 15413160 - CsaV3_6G022470.1 Csa06g01752 533379

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01752 914 Gene3D Immunoglobulins 361 457 IPR013783 -
Csa06g01752 914 Gene3D - 769 815 - -
Csa06g01752 914 CDD IPT 368 454 - -
Csa06g01752 914 ProSiteProfiles CG-1 DNA-binding domain profile. 29 155 IPR005559 GO:0003677
Csa06g01752 914 SMART ANK_2a 604 633 IPR002110 GO:0005515
Csa06g01752 914 SMART ANK_2a 643 672 IPR002110 GO:0005515
Csa06g01752 914 Coils Coil 882 902 - -
Csa06g01752 914 SUPERFAMILY E set domains 367 454 IPR014756 -
Csa06g01752 914 Gene3D - 502 667 IPR036770 -
Csa06g01752 914 ProSiteProfiles IQ motif profile. 768 795 IPR000048 GO:0005515
Csa06g01752 914 Pfam IPT/TIG domain 368 453 IPR002909 -
Csa06g01752 914 Pfam CG-1 domain 35 148 IPR005559 GO:0003677
Csa06g01752 914 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 20 908 - -
Csa06g01752 914 Pfam IQ calmodulin-binding motif 793 812 IPR000048 GO:0005515
Csa06g01752 914 ProSiteProfiles Ankyrin repeat profile. 604 636 IPR002110 GO:0005515
Csa06g01752 914 SMART iq_5 790 812 IPR000048 GO:0005515
Csa06g01752 914 SMART iq_5 868 890 IPR000048 GO:0005515
Csa06g01752 914 SMART iq_5 767 789 IPR000048 GO:0005515
Csa06g01752 914 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 713 818 IPR027417 -
Csa06g01752 914 Pfam Ankyrin repeats (3 copies) 553 633 IPR002110 GO:0005515
Csa06g01752 914 ProSiteProfiles Ankyrin repeat region circular profile. 604 632 - -
Csa06g01752 914 SUPERFAMILY Ankyrin repeat 561 666 IPR036770 -
Csa06g01752 914 ProSiteProfiles IQ motif profile. 870 898 IPR000048 GO:0005515
Csa06g01752 914 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6 20 908 - -
Csa06g01752 914 ProSiteProfiles IQ motif profile. 791 815 IPR000048 GO:0005515
Csa06g01752 914 ProSiteProfiles IQ motif profile. 715 744 IPR000048 GO:0005515
Csa06g01752 914 SMART CG_1_2 32 150 IPR005559 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01752 K21596 CAMTA; calmodulin-binding transcription activator - csv:101211298 1773.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01752 Csa-Chr6:15400953 Csa07g00551 Csa-Chr7:4030504 1.74E-40 dispersed
Csa06g01752 Csa-Chr6:15400953 Csa06g00984 Csa-Chr6:7994028 1.55E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g92 Blo01g00054 . Bda03g01166 Bda08g00378 Bpe04g01108 . Bma04g01136 Bma05g01017 Cmo08g01236 Cmo17g00349 . . . . . . . . . . . . . . Cla06g00439 Cam06g0464 Cec06g0470 Cco06g0469 Clacu06g0451 Cmu06g0452 Cre06g1228 Cone14ag0727 . . . . Csa06g01752 Chy11g01557 . . . . . Bpe05g00817 . . . . . . Cma08g01266 Cma17g00358 Car08g01136 Car17g00331 Cpe12g00311 Cpe17g00057 Bhi12g01914 Tan06g2741 . Lac11g0922 . . Lcy12g0790 . . . . . . . Lsi09g01478 . . Cme11g02068
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa07g00551 . 1 1092 CAMTA Transcription Factor Family AT5G64220 53.4 2.6e-275 945.3
Csa06g00825 . 6 933 CAMTA Transcription Factor Family AT1G67310 52.3 3.2e-254 875.2
Csa06g01752 . 34 906 CAMTA Transcription Factor Family AT3G16940 54.2 8.7e-258 886.7
Csa06g01752 . 11 628 CAMTA Transcription Factor Family AT4G16150 53.5 4.2e-192 668.7
Csa07g00551 . 1 1092 CAMTA Transcription Factor Family AT5G64220 53.4 2.6e-275 945.3
Csa06g00825 . 6 933 CAMTA Transcription Factor Family AT1G67310 52.3 3.2e-254 875.2
Csa06g01752 . 11 628 CAMTA Transcription Factor Family AT4G16150 53.5 4.2e-192 668.7
Csa06g01752 . 34 906 CAMTA Transcription Factor Family AT3G16940 54.2 8.7e-258 886.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005047 3 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32034 PF03859 CG-1 3.40E-45 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g01752 Csa_Chr06 FPKM 7.763355 9.497392 16.830269 18.317837 4.045143 5.308794 3.976661 13.41876 11.367701 12.173814