Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01765 ATGGATCTCGGCCACATGAAGGGATCGATCCCGACACCGACACCGACGCCGACTTCAATTTCTGCTAGAAAAGCCACGGATATGAGTTCTGATCAGTTTCCGGCGGGTCTTCGGGTTCTGGTTGTAGACGACGATCCTACCTGTCTCAAGATCTTGGAAAAGATGCTTCAGAATTGCTGCTATGCTGTGACGAAATGCAACCGAGCGGAGATTGCTCTATCCATGCTTCGTGAGAACAAAAATGGTTTTGATATTGTCTTAAGTGATGTGCATATGCCTGACATGGATGGATTCAAGCTTCTAGAGCAAGTTGGGCTGGAGATGGATTTGCCTGTTATCATGATGTCAGCTGATGATGGGAAGAATGTTGTGATGAAAGGAGTGATTCATGGTGCTTGTGATTACCTTATCAAACCTGTTCGTATTGAAGCACTCAGAAACCTATGGCAACATGTAGTTCGGAAGAGAAAGACTGAATGGAAGGATTTAGAGCAATCTGGCAGCGTGGATGAGGGAGATCGAGAGCAAAATCTGTCTGAAGGTGCAAATTATTCATCTTCGGCATATGAAGGAAGTTGGAACAGCTCGAAGAGGAGGAGGGATGCAGAAGAAGAGCCTGAGGAGAGGGACGATACATCAACTTTAAAGAAGCCGAGGGTGGTTTGGTCAGTTGAGCTCCATCAACAGTTTGTTGCCGCAGTTAATCAGCTAGGGATTGACAAGGCTGTCCCTAAGAAGATATTGGAGTTGATGAATGTTCCAGGTCTTACTAGAGAAAATGTTGCCAGTCATCTTCAGAAATATCGCTTATATCTTAGAAGGCTTAGTGGAGTATCTCCACACCAAAGTAATTTGAACAATTCTTTTATCAACCCCCAAGACCCACCTTTTGGATCAATGGGTTCATTCAATGGGATCGATCTTCAGACGCTTTCGGTCACCGGCCAACTCTCGCCACAAAGTCTTGCTGCCCTCCAAGCAACAGGACTTCGTAGGCCTACCGCAAAATCTGGCATATCCATGGCCCTTGATCAGAACAATATATTCAGCTTTGAAAATCCAAAATTAAGGTTTGTTGAGGACCAAACACAACATCTAAATAATAGTAAACCAGTAAACTTGTTTCATGGGATTCCAACAAAAATGGAGCCAAAGCAGCTTGCGAATATTCAGCACCCTTCCGTGCAGCCTCAGGGAAACATAAACATGCAACTCAATATCAAGAGCGAACATGGTGGAACTCAACTAATGCATTTGTCTCAACAACAAACTATAGGACAAACTCTAGGTAACTCTCCTGCTAGCCATTTACCCAGAATTTCATCAACATTAAGGAAACCGATCATATCGGGTAGTGTTATGAGAGGAAATGGGACTGCTGATAATAGTCACAGACCTGGATACAACCTAGTTTCGCCAACATCGGTGATGGTGAACTATCCAATGAGCCAAACCACAGAATTGTCTAACAATTATTCCCTTCAGAGCAATTCATCTGTATCTACCCTGAACTGTAAAGGGATGTTTCAAGAAGAGATTAGTTCAGATCTAAAAGTTTCGGGCGGACTAATGTCGAGTTATGATGTTTTTAGTGACTTGCCCCTGCAGAAATCCCATGACTGGGATTCTCAAAATGTTAGCACCTTGGCCTTTGGTACTTTTCACCATGGGAACTTCATACAGGATAGCTTTGATATCTCATCCTCCACTTTAATTCATCATGGTTTCCCTTCAAGCCAAACGAATGGACAAAATCAAAATTCATCAGTCGTTGGAAAGACTGTGTTTTCCTTTTCGGATTCGACTCAACCCGAGAATCCTCAAAATATTTTCCAAAACTCACTTCTCGATCCTGTGGAGGTCAAATCTCAGAGAATCCCCGATGCAAACTATCAAACTGACCTCTTATCCGAGGACTTTGGCCAGGATGAACTTCTTGGTGTCTTTATCAAACAACAGCAACAAGGAGACAACGGATCGGTCGACTTTAGTGGGTACCAAACAGAGAATATTTGTGTTTAG 2022 43.27 MDLGHMKGSIPTPTPTPTSISARKATDMSSDQFPAGLRVLVVDDDPTCLKILEKMLQNCCYAVTKCNRAEIALSMLRENKNGFDIVLSDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDGKNVVMKGVIHGACDYLIKPVRIEALRNLWQHVVRKRKTEWKDLEQSGSVDEGDREQNLSEGANYSSSAYEGSWNSSKRRRDAEEEPEERDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSPHQSNLNNSFINPQDPPFGSMGSFNGIDLQTLSVTGQLSPQSLAALQATGLRRPTAKSGISMALDQNNIFSFENPKLRFVEDQTQHLNNSKPVNLFHGIPTKMEPKQLANIQHPSVQPQGNINMQLNIKSEHGGTQLMHLSQQQTIGQTLGNSPASHLPRISSTLRKPIISGSVMRGNGTADNSHRPGYNLVSPTSVMVNYPMSQTTELSNNYSLQSNSSVSTLNCKGMFQEEISSDLKVSGGLMSSYDVFSDLPLQKSHDWDSQNVSTLAFGTFHHGNFIQDSFDISSSTLIHHGFPSSQTNGQNQNSSVVGKTVFSFSDSTQPENPQNIFQNSLLDPVEVKSQRIPDANYQTDLLSEDFGQDELLGVFIKQQQQGDNGSVDFSGYQTENICV* 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15531730 15535426 - CsaV3_6G022600.1 Csa06g01765 533392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01765 673 CDD REC_typeB_ARR-like 39 153 - -
Csa06g01765 673 MobiDBLite consensus disorder prediction 1 25 - -
Csa06g01765 673 Pfam Myb-like DNA-binding domain 219 269 IPR001005 -
Csa06g01765 673 MobiDBLite consensus disorder prediction 178 193 - -
Csa06g01765 673 Pfam Response regulator receiver domain 39 147 IPR001789 GO:0000160
Csa06g01765 673 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 647 - -
Csa06g01765 673 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 217 270 IPR006447 GO:0003677
Csa06g01765 673 SUPERFAMILY Homeodomain-like 214 274 IPR009057 -
Csa06g01765 673 Gene3D - 37 174 - -
Csa06g01765 673 Gene3D - 214 276 - -
Csa06g01765 673 MobiDBLite consensus disorder prediction 160 177 - -
Csa06g01765 673 PIRSF RR_ARR_type-B 19 663 IPR017053 GO:0003677|GO:0003700|GO:0009736
Csa06g01765 673 MobiDBLite consensus disorder prediction 160 214 - -
Csa06g01765 673 SMART REC_2 37 149 IPR001789 GO:0000160
Csa06g01765 673 ProSiteProfiles Response regulatory domain profile. 38 153 IPR001789 GO:0000160
Csa06g01765 673 MobiDBLite consensus disorder prediction 11 25 - -
Csa06g01765 673 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 647 IPR045279 GO:0009736
Csa06g01765 673 SUPERFAMILY CheY-like 36 161 IPR011006 -
Csa06g01765 673 MobiDBLite consensus disorder prediction 194 214 - -
Csa06g01765 673 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 216 273 IPR017930 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g01497 Csa06g01765 CCT
Csa03g01497 Csa06g01765 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01861 Csa-Chr1:15634051 Csa06g01765 Csa-Chr6:15531730 4.78E-108 dispersed
Csa02g01797 Csa-Chr2:17338517 Csa06g01765 Csa-Chr6:15531730 3.76E-97 dispersed
Csa03g01678 Csa-Chr3:12563313 Csa06g01765 Csa-Chr6:15531730 1.38E-42 dispersed
Csa04g02646 Csa-Chr4:25830357 Csa06g01765 Csa-Chr6:15531730 2.05E-110 dispersed
Csa06g00651 Csa-Chr6:5413160 Csa06g01765 Csa-Chr6:15531730 1.50E-50 dispersed
Csa05g00009 Csa-Chr5:54545 Csa06g01765 Csa-Chr6:15531730 3.97E-24 transposed
Csa03g01497 Csa-Chr3:11108956 Csa06g01765 Csa-Chr6:15531730 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32038 PF00072 Response_reg 8.80E-22 CL0304 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01765 - K14491 csv:101210138 1315.44