Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g01776 | ATGGTGGTTTTTCCGGAAGTTATTGAGGAAATGGTAAGAAATATGTCGATAAAGAAAAAGAATAATAATGAGGATGATGGAAATAAAGAAAAAATAGGTAAAGAGGGAAGAAAGAACAAATCCATGATTTGTTTATCTGGAAGTGTTAAAACCAGCAAGTTTGAAGATATGGCTTCTGTTTGCTCCAAGAGAGGAAACAAAGGAATTAATCAAGATTCTCTTGTTCTTTGGGAGGACTTGGGTTGCCAGGGAGATGTGGTATTATGTGGGATGTTTGATGGACATGGGCCTTGGGGTCACATGATTAGCAAACAAGTCAGAAAATCATTACCTTCTCAATTACTCACCAATATTCAACAAAACCTTTCCATGCAAACCGACCAAACCCATCTCTTTCCTTTCAACCTATGGAAGCAATCTTGCTTAAAAACTTATGCCACCATTGATGAGGAGCTCAAGCAACACCCTCGTATTGATTCCTTTTATAGTGGCACCACTGCCTTAACCGTTGTTAAACAGGGTCGACATCTTGTTGTTGCAAATGCTGGTGATTCACGAGCTGTCTTAGCTGTAACTTCTGATGATGGGTGCTTGAAATCGATTCAACTTTCAGTTGATTTTAGACCTAACTTGCCTGAGGAGGCTGAAAGAATAAAGCAATCAAAAGGGAAAGTATTATGTTTAAAGGACGAACCTGGGGTTTATAGAGTATGGACTCCTGACTCTGGGACTCCAGGTTTGGCTATTTCAAGAGCCTTTGGGGACTACTGTTCCAAGCAATACGGTCTCATTTCTGTGCCCGATGTCAGCCACCGAGTCATTACCACGAAGGATCAGTTTGTCATCGTCGCCACCGATGGGGTGTGGGACGTCATGTCGAATCAAGAAGCGGTTCACATAGTTTCTACAACACCAAATAGAGAAATGTCGGCCAAAAGACTAGTGGATTGTGCTGCACGTGCGTGGAAATCAAAGAAACGAGGGTTCGCAAGGGACGACATGTCGGCCATTTGCCTCTTTTTTCATGCTGCACACACACAAAATGATTGA | 1050 | 42.1 | MVVFPEVIEEMVRNMSIKKKNNNEDDGNKEKIGKEGRKNKSMICLSGSVKTSKFEDMASVCSKRGNKGINQDSLVLWEDLGCQGDVVLCGMFDGHGPWGHMISKQVRKSLPSQLLTNIQQNLSMQTDQTHLFPFNLWKQSCLKTYATIDEELKQHPRIDSFYSGTTALTVVKQGRHLVVANAGDSRAVLAVTSDDGCLKSIQLSVDFRPNLPEEAERIKQSKGKVLCLKDEPGVYRVWTPDSGTPGLAISRAFGDYCSKQYGLISVPDVSHRVITTKDQFVIVATDGVWDVMSNQEAVHIVSTTPNREMSAKRLVDCAARAWKSKKRGFARDDMSAICLFFHAAHTQND* | 350 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 15614294 | 15619153 | - | CsaV3_6G022710.1 | Csa06g01776 | 533403 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g01776 | 349 | PANTHER | ALPHABET, ISOFORM E-RELATED | 1 | 348 | - | - | |
Csa06g01776 | 349 | CDD | PP2Cc | 57 | 341 | IPR001932 | - | |
Csa06g01776 | 349 | PANTHER | PROTEIN PHOSPHATASE 2C 41-RELATED | 1 | 348 | - | - | |
Csa06g01776 | 349 | Gene3D | - | 46 | 344 | IPR036457 | - | |
Csa06g01776 | 349 | ProSiteProfiles | PPM-type phosphatase domain profile. | 57 | 341 | IPR001932 | - | |
Csa06g01776 | 349 | SMART | PP2C_4 | 47 | 339 | IPR001932 | - | |
Csa06g01776 | 349 | Pfam | Protein phosphatase 2C | 71 | 318 | IPR001932 | - | |
Csa06g01776 | 349 | SUPERFAMILY | PP2C-like | 57 | 342 | IPR036457 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa03g01549 | Csa06g01776 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g02727 | Csa-Chr1:24177025 | Csa06g01776 | Csa-Chr6:15614294 | 1.56E-125 | dispersed | |
Csa06g01776 | Csa-Chr6:15614294 | Csa07g00429 | Csa-Chr7:3097301 | 4.53E-97 | dispersed | |
Csa06g01776 | Csa-Chr6:15614294 | Csa02g00474 | Csa-Chr2:3366498 | 3.84E-147 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g01776 | - | - | csv:101214034 | 705.286 |