Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01776 ATGGTGGTTTTTCCGGAAGTTATTGAGGAAATGGTAAGAAATATGTCGATAAAGAAAAAGAATAATAATGAGGATGATGGAAATAAAGAAAAAATAGGTAAAGAGGGAAGAAAGAACAAATCCATGATTTGTTTATCTGGAAGTGTTAAAACCAGCAAGTTTGAAGATATGGCTTCTGTTTGCTCCAAGAGAGGAAACAAAGGAATTAATCAAGATTCTCTTGTTCTTTGGGAGGACTTGGGTTGCCAGGGAGATGTGGTATTATGTGGGATGTTTGATGGACATGGGCCTTGGGGTCACATGATTAGCAAACAAGTCAGAAAATCATTACCTTCTCAATTACTCACCAATATTCAACAAAACCTTTCCATGCAAACCGACCAAACCCATCTCTTTCCTTTCAACCTATGGAAGCAATCTTGCTTAAAAACTTATGCCACCATTGATGAGGAGCTCAAGCAACACCCTCGTATTGATTCCTTTTATAGTGGCACCACTGCCTTAACCGTTGTTAAACAGGGTCGACATCTTGTTGTTGCAAATGCTGGTGATTCACGAGCTGTCTTAGCTGTAACTTCTGATGATGGGTGCTTGAAATCGATTCAACTTTCAGTTGATTTTAGACCTAACTTGCCTGAGGAGGCTGAAAGAATAAAGCAATCAAAAGGGAAAGTATTATGTTTAAAGGACGAACCTGGGGTTTATAGAGTATGGACTCCTGACTCTGGGACTCCAGGTTTGGCTATTTCAAGAGCCTTTGGGGACTACTGTTCCAAGCAATACGGTCTCATTTCTGTGCCCGATGTCAGCCACCGAGTCATTACCACGAAGGATCAGTTTGTCATCGTCGCCACCGATGGGGTGTGGGACGTCATGTCGAATCAAGAAGCGGTTCACATAGTTTCTACAACACCAAATAGAGAAATGTCGGCCAAAAGACTAGTGGATTGTGCTGCACGTGCGTGGAAATCAAAGAAACGAGGGTTCGCAAGGGACGACATGTCGGCCATTTGCCTCTTTTTTCATGCTGCACACACACAAAATGATTGA 1050 42.1 MVVFPEVIEEMVRNMSIKKKNNNEDDGNKEKIGKEGRKNKSMICLSGSVKTSKFEDMASVCSKRGNKGINQDSLVLWEDLGCQGDVVLCGMFDGHGPWGHMISKQVRKSLPSQLLTNIQQNLSMQTDQTHLFPFNLWKQSCLKTYATIDEELKQHPRIDSFYSGTTALTVVKQGRHLVVANAGDSRAVLAVTSDDGCLKSIQLSVDFRPNLPEEAERIKQSKGKVLCLKDEPGVYRVWTPDSGTPGLAISRAFGDYCSKQYGLISVPDVSHRVITTKDQFVIVATDGVWDVMSNQEAVHIVSTTPNREMSAKRLVDCAARAWKSKKRGFARDDMSAICLFFHAAHTQND* 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15614294 15619153 - CsaV3_6G022710.1 Csa06g01776 533403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01776 349 PANTHER ALPHABET, ISOFORM E-RELATED 1 348 - -
Csa06g01776 349 CDD PP2Cc 57 341 IPR001932 -
Csa06g01776 349 PANTHER PROTEIN PHOSPHATASE 2C 41-RELATED 1 348 - -
Csa06g01776 349 Gene3D - 46 344 IPR036457 -
Csa06g01776 349 ProSiteProfiles PPM-type phosphatase domain profile. 57 341 IPR001932 -
Csa06g01776 349 SMART PP2C_4 47 339 IPR001932 -
Csa06g01776 349 Pfam Protein phosphatase 2C 71 318 IPR001932 -
Csa06g01776 349 SUPERFAMILY PP2C-like 57 342 IPR036457 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g01549 Csa06g01776 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02727 Csa-Chr1:24177025 Csa06g01776 Csa-Chr6:15614294 1.56E-125 dispersed
Csa06g01776 Csa-Chr6:15614294 Csa07g00429 Csa-Chr7:3097301 4.53E-97 dispersed
Csa06g01776 Csa-Chr6:15614294 Csa02g00474 Csa-Chr2:3366498 3.84E-147 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01776 - - csv:101214034 705.286