Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01777 ATGGCGCATGTTGAAGAAAGCTTCCCATGTATTTTACTTGCATTTCGCATTAAAAAAACGGGCATTCATCGAGGAAATTCACGAGAAGCAAGAACAGGAATAGGAGATCAAACAGCAGTACCCCAAGATGAGGACGGACCAGATGATGAGGCCGAGCCTCTGCATCACGATGAAAGTTCTAAAAATAGGGATGTTCCATCCAGTGCAGCCCTGCCAATTATTCGGCCTGCCTTATTAAGGCAGCACTCTATGTCTGATAGAGCTAAGACTGCTATGCAAGGGTATCTGAATCACTTTTTGAGTAACATGGATATTGTCAACTCTCGGGAGGTTTGCAGGTTCTTGGAGGTCTCTAAGTTATCATTTTCACCAGAATATGGCCCAAAGTTGAAAGAGGATTATGTCATGGTGAAGCATCTACCTAAAATTCCAAAGCAAGACGACTCTAGGAAATGTTGTCTATGCCCATGGTTTGGTTGTTGTAATGACAATTGGCAAAAGGTGTGGGCTGTATTAAAACCTGGGTTTTTGGCCTTGTTGGGAGATCCTTTTGATACTCAACCAATGGATATTATAGTTTTTGATGTGCTACCTACTTCTGATGGCAATGGAGATGGACGACTATCTTTGGCTAAGGAAATTAGGGAGCCAAATCCGTTACGACATTCATTTAAGGTAGCATGTGGAAATAGGAGTATTAGGATAAGAGCGAAGACTGGATCCAAGGTTAAAGATTGGGTTGCTGCAATTAATGATGCTGGACTGAGGCCTCCTGAGGGCTGGTGTCATCCTCACCGTTTTGGTTCTTATGCTCCACCAAGAGGTTTGACTGACGATGGTAGCAAGGCTCAATGGTTCATCGACGGCCTAGCAGCTTTTGAAGCGATTGCCTTTTCCATTGAACGTGCAAAATCAGAGATTTTCATTTGTGGTTGGTGGCTTTGCCCAGAATTGTATCTGCGGCGGCCTTTTGTTTCCAATGCTTCATCTAGGCTTGATGCTTTACTTGAAGCAAAAGCTAAGGAAGGGGTCCAGATATACATTCTTCTCTACAAAGAGGTTGCCCTTGCTTTAAAAATTAACAGTGTTTATAGTAAGAGAAAACTTCTCAGCATCCATGAGAATGTGAGAGTATTGCGCTACCCCGACCATTTCTCCTGTGGTGTGTACTTATGGTCCCACCATGAAAAACTTGTCATTGTTGATTATCATATTTGCTTTATTGGAGGACTGGATTTATGCTTTGGTCGTTATGATACACCTGAACATAAAGTTGGTGATTGTCCTCCTTCAGTATGGCCTGGAAAGGACTACTATAATCCAAGGGAATCTGAGCCAAATTCATGGGAAGATACCATGAGAGATGAGTTGGATCGCAAGAAATATCCTCGCATGCCTTGGCATGATGTCCACTGTGCACTATGGGGACCACCTTGTCGAGACATAGCCAGGCATTTTGTCCAACGCTGGAATTATGCTAAGAGAAATAAAGCCCCAAATGAGCAAGCAATTCCATTACTTATGCCTCAGCATCATATGGTCATTCCTCATTATTTGTGGAATAGCCGAGAGTTGGAGGTTGAAAAGAAGAGTCTTGACGACCCTAGAGAAACAACAGTGCAAGATTCGTTTTCTCGTGGATCGTCTTTCCATGATATTCCATTGCTTTTGCCTCAAGAGGCTGATGGACAGGGTGCTGAAAACGAAGGTCCAAAATTAAATGGACTGGAACCCATTGTCAATCCCCTTGATCAGCCAAGTAGGGTTAGCAGTGGTCTCTCCTTTTCCTTCAGGAAGATCAAAGTTGAACCCATGGGACAAGATATGCCTCTGAAAGGCTTTGTCGATGATCTTGACCATTTGGATTCTCATGGAAAGTTTTCTGGAGATGGTAAAACACATCATCGTATCAAAAGTTCAGATTTTGAGTGGTGGGAAACACAAGACAGGGGAGATCATGGTGGCTTCACAGATGAATCTGGACAAGTTGGTCCACGTGCTTCATGTCGTTGCCAGGTCATCAGAAGCGTCAGTCAGTGGTCTGCTGGGACAAGCCAAGATGAAGAAAGCATTCACACTGCATATTGCTCTCTTATTGAGAAGGCAGAACATTTTATCTACATTGAGAATCAATTTTTTATATCAGGCCTCTCAGACGATGTTTCAATAAGGAACCGTGTGTTAGACGCATTATATCGCCGAATAATGAGAGCCTACCGTGAAAAGAAGATTTTTAGGGTCATTGTTGTCATACCACTCTTGCCTGGATTTCAGGGGGGACTGGATGACAGTGGTGCAGCATCTGTTAGGGCTATAATGCATTGGCAGTATCGAACTATATGCCGAGGACCGAATTCAATATTGCATAATCTTTATGAGCTTCTTGGTTCTAAATTTCATGATTATATATCGTTTTATGGCCTCAGAGCTTATGGTAAACTCTTTGATGGTGGTCCTGTGGCTACAAGCCAGGTGTACGTGCATAGTAAAATTATGATTATCGATGATTGTATTGCTTTGATTGGTTCGGCTAATATCAACGACAGAAGTTTACTCGGTGCTCGGGATTCCGAGATCGCCGTTGTTATTGAAGATAACGAACTCATCAATTCATCTATGGGAGGACAACCATGGAAAGCAGGAAAATTTTGCTGGAGTCTACGTATCTCTCTTTGGTCTGAACATCTTGGTCTTCGTCCCGGACAGGTCAGTCAAATAGTTGATCCAGTTGCTGATTCAACCTACAAGGATACGTGGATGGCAACTGCCAAGACAAACACAACAATATACCAAGATGTTTTTTCTTGCATACCAAACGACCTCATAAATTCCAGAGCTGGGCTGAGACAGAGCGTTGCGATCTGGAAAGAGCGACTGGGACACACGACAATAGATTTAGGAATTGCCCCTGAGAAGCTTGAGTTTTATAGGAATGGAGAAATTGAAAGGATTGATCCAATGGAGAGATTAAGTTCAGTGAAGGGGCATCTTGTTTCCTTCCCACTCGAATTCCTCAGCAAAGAAGATCTAAGACCTGTGTTCAATCAGAGTGAGTATTATGCATCTCTAGTTTTTCATTAA 3081 42.84 MAHVEESFPCILLAFRIKKTGIHRGNSREARTGIGDQTAVPQDEDGPDDEAEPLHHDESSKNRDVPSSAALPIIRPALLRQHSMSDRAKTAMQGYLNHFLSNMDIVNSREVCRFLEVSKLSFSPEYGPKLKEDYVMVKHLPKIPKQDDSRKCCLCPWFGCCNDNWQKVWAVLKPGFLALLGDPFDTQPMDIIVFDVLPTSDGNGDGRLSLAKEIREPNPLRHSFKVACGNRSIRIRAKTGSKVKDWVAAINDAGLRPPEGWCHPHRFGSYAPPRGLTDDGSKAQWFIDGLAAFEAIAFSIERAKSEIFICGWWLCPELYLRRPFVSNASSRLDALLEAKAKEGVQIYILLYKEVALALKINSVYSKRKLLSIHENVRVLRYPDHFSCGVYLWSHHEKLVIVDYHICFIGGLDLCFGRYDTPEHKVGDCPPSVWPGKDYYNPRESEPNSWEDTMRDELDRKKYPRMPWHDVHCALWGPPCRDIARHFVQRWNYAKRNKAPNEQAIPLLMPQHHMVIPHYLWNSRELEVEKKSLDDPRETTVQDSFSRGSSFHDIPLLLPQEADGQGAENEGPKLNGLEPIVNPLDQPSRVSSGLSFSFRKIKVEPMGQDMPLKGFVDDLDHLDSHGKFSGDGKTHHRIKSSDFEWWETQDRGDHGGFTDESGQVGPRASCRCQVIRSVSQWSAGTSQDEESIHTAYCSLIEKAEHFIYIENQFFISGLSDDVSIRNRVLDALYRRIMRAYREKKIFRVIVVIPLLPGFQGGLDDSGAASVRAIMHWQYRTICRGPNSILHNLYELLGSKFHDYISFYGLRAYGKLFDGGPVATSQVYVHSKIMIIDDCIALIGSANINDRSLLGARDSEIAVVIEDNELINSSMGGQPWKAGKFCWSLRISLWSEHLGLRPGQVSQIVDPVADSTYKDTWMATAKTNTTIYQDVFSCIPNDLINSRAGLRQSVAIWKERLGHTTIDLGIAPEKLEFYRNGEIERIDPMERLSSVKGHLVSFPLEFLSKEDLRPVFNQSEYYASLVFH* 1027
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15623047 15644887 - CsaV3_6G022720.1 Csa06g01777 533404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01777 1026 SUPERFAMILY PH domain-like 160 253 - -
Csa06g01777 1026 SMART PH_update 129 257 IPR001849 -
Csa06g01777 1026 CDD PH_PLD 106 253 - -
Csa06g01777 1026 Gene3D - 159 255 IPR011993 -
Csa06g01777 1026 SUPERFAMILY Phospholipase D/nuclease 234 509 - -
Csa06g01777 1026 SUPERFAMILY Phospholipase D/nuclease 663 868 - -
Csa06g01777 1026 CDD PLDc_vPLD1_2_yPLD_like_2 683 867 - -
Csa06g01777 1026 PANTHER PHOSPHOLIPASE 33 1023 - -
Csa06g01777 1026 MobiDBLite consensus disorder prediction 26 66 - -
Csa06g01777 1026 PANTHER PHOSPHOLIPASE D 33 1023 IPR015679 -
Csa06g01777 1026 PIRSF PLD_euk 14 542 IPR016555 GO:0004630|GO:0006654|GO:0048017
Csa06g01777 1026 PIRSF PLD_euk 593 1026 IPR016555 GO:0004630|GO:0006654|GO:0048017
Csa06g01777 1026 SMART pld_4 823 850 IPR001736 GO:0003824
Csa06g01777 1026 SMART pld_4 390 417 IPR001736 GO:0003824
Csa06g01777 1026 Gene3D Endonuclease Chain A 278 515 - -
Csa06g01777 1026 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 823 850 IPR001736 GO:0003824
Csa06g01777 1026 Pfam PLD-like domain 696 869 IPR025202 -
Csa06g01777 1026 CDD PLDc_vPLD1_2_yPLD_like_1 283 428 - -
Csa06g01777 1026 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 390 417 IPR001736 GO:0003824
Csa06g01777 1026 Pfam Phospholipase D Active site motif 390 417 IPR001736 GO:0003824
Csa06g01777 1026 Gene3D Endonuclease Chain A 650 879 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00472 Csa-Chr2:3341776 Csa06g01777 Csa-Chr6:15623047 0 dispersed
Csa06g01777 Csa-Chr6:15623047 Csa06g03367 Csa-Chr6:28038914 6.05E-20 dispersed
Csa06g01777 Csa-Chr6:15623047 Csa02g02386 Csa-Chr2:21161532 1.44E-19 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01777 K01115 - csv:101211856 2071.59