Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01790 ATGTCAAACGGATTTGCCAATGCCGAAGGTGATAAAAAGAAGAAGAAGATAGCCATCATTAGTGTGTCTTCTTTAATCCTGGTAGCAATGGTTGTTGCCGTTACCGTTGGCGTCAACAATGCACCCCATGGAGAGGAGCACGGTGATGACAATCATGGCAGCGAAACCACTCCTGAAATCACATCATCCACCAAAGCTATCCAAGCCATTTGTCAACCAACGGATTACAAAGAAACCTGTGAGAAGAGTCTAGAGGCAGAAGCCGGTAACACAACAGACCCAAAAGAGCTAGTGAAAGTGGGCTTTAAAATCGCAACAAGGAGTCTGAACGAGGCTATTAAGAATTCAACCACACTTAAAGAATTAGCCAAAGACCCCAGAACCAACCAAGCCCTTCAAAATTGTCGTGAGCTACTAGAATATGCCATTGATGATTTGAACCAGTCGTTCGAAAGAATCGGCACCTTCCAAATGTCCAAACTCGATGATTTCGTCGCGGATTTAAAGATTTGGCTCAGTGGTGCACTCACGTACGAACAAACTTGCTTGGATGGTTTTGAAAATACTACAGGTGATGCTGGTGTCAGAATGCAAGAGTTTCTGAAGTCAGCTCAGCAAATGACAACCAATGGCCTTGGCATTGTTAATGAATTGTCTACCATTCTGGGTTCACTTCAGCTTCCTGGAATGAGTGGACGACGACTTTTGGAAGATGATGATCGTGAAATGCCATCATGGGTTAGCGACGGAAAGAGACGATTGATGCAGGCGGGAGCCGCTGCGATGAAACCTGATTTGGTTGTAGCTCAAGATGGGAGTGGGAAATACAAAACCATAAATGCAGCTTTAGCTGATGTGCCTTTGAAGAGTAATAAAACGTTTGTGATTCATGTGAAGGCTGGAATTTACAAAGAAATTGTTGTCATCCCCAAACATATGACTCATCTTACAATGTACGGTGATGGTCCAACCAAAACTGTCGTCACTGGTAGCTTAAACTTCATCGATGGCATTCAAACATTCAAGACTGCTACCTTCTCTGCAATTGGAGCTAACTTCTACGCTAGAGATATGGGATTCGAGAACACAGCTGGAGCAGCAAAGCACCAGGCCGTGGCCCTACGAGTCCAATCCGATAGATCAATCTTCTTCAACTGCCAAATCGACGGATACCAAGACACACTCTACGCACACGCTCATCGTCAGTTCTATAGAGATTGCACAATCAGTGGCACCATCGACTTCGTCTTCGGAAACGCTGCTACAAATTTCCAGAACTGCAAGCTAGTGGTGCGAAAGCCATTGGATAACCAACAATGCATCGTAACTGCTCACGGGCGTTTGAACAGAAAGGAACCAACGGCATTGATCTTCCAGAGCTGCCATTTCATGGGTGATCCAGCTTACTTGCCATTCAAGGCCATCAACAAGGCTTATTTGGGACGTCCATGGAAGGAATATTCAAGAACCATTATAATCGGATCAACAATAGACGATATAATTCAGCCAGAAGGATGGTTGCCATGGATGGGAGATTTTGGATTGAACACATTGTTCTACGCGGAGGTACAAAACAAAGGAGCAGGGGCTGATGAAAGTAAGAGAGTGAAGTGGAGAGGAATTAAACATATTACGCCACAACATGCTGCGGACTTCACTCCAAGACGATTTATTGATGGCGATGCATGGATTCCTGCCAAGGGAATTCCTTACTCTTCTGGGATGATGTAA 1731 44.71 MSNGFANAEGDKKKKKIAIISVSSLILVAMVVAVTVGVNNAPHGEEHGDDNHGSETTPEITSSTKAIQAICQPTDYKETCEKSLEAEAGNTTDPKELVKVGFKIATRSLNEAIKNSTTLKELAKDPRTNQALQNCRELLEYAIDDLNQSFERIGTFQMSKLDDFVADLKIWLSGALTYEQTCLDGFENTTGDAGVRMQEFLKSAQQMTTNGLGIVNELSTILGSLQLPGMSGRRLLEDDDREMPSWVSDGKRRLMQAGAAAMKPDLVVAQDGSGKYKTINAALADVPLKSNKTFVIHVKAGIYKEIVVIPKHMTHLTMYGDGPTKTVVTGSLNFIDGIQTFKTATFSAIGANFYARDMGFENTAGAAKHQAVALRVQSDRSIFFNCQIDGYQDTLYAHAHRQFYRDCTISGTIDFVFGNAATNFQNCKLVVRKPLDNQQCIVTAHGRLNRKEPTALIFQSCHFMGDPAYLPFKAINKAYLGRPWKEYSRTIIIGSTIDDIIQPEGWLPWMGDFGLNTLFYAEVQNKGAGADESKRVKWRGIKHITPQHAADFTPRRFIDGDAWIPAKGIPYSSGMM* 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15830169 15833747 + CsaV3_6G023840.1 Csa06g01790 533417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01790 576 Gene3D Invertase/pectin methylesterase inhibitor family protein 61 219 IPR035513 -
Csa06g01790 576 SUPERFAMILY Pectin lyase-like 260 574 IPR011050 -
Csa06g01790 576 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 65 218 IPR035513 -
Csa06g01790 576 CDD PMEI-like_3 69 220 - -
Csa06g01790 576 ProSitePatterns Pectinesterase signature 2. 409 418 IPR033131 -
Csa06g01790 576 TIGRFAM PME_inhib: pectinesterase inhibitor domain 62 218 IPR006501 GO:0004857
Csa06g01790 576 Pfam Pectinesterase 265 561 IPR000070 GO:0030599|GO:0042545
Csa06g01790 576 SMART PMEI_2 62 214 IPR006501 GO:0004857
Csa06g01790 576 Gene3D - 259 575 IPR012334 -
Csa06g01790 576 PANTHER PECTINESTERASE 19 574 - -
Csa06g01790 576 MobiDBLite consensus disorder prediction 42 63 - -
Csa06g01790 576 ProSitePatterns Pectinesterase signature 1. 290 309 IPR018040 -
Csa06g01790 576 Pfam Plant invertase/pectin methylesterase inhibitor 66 213 IPR006501 GO:0004857
Csa06g01790 576 PANTHER PECTINESTERASE 19 574 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g01487 Csa06g01790 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02747 Csa-Chr1:24351481 Csa06g01790 Csa-Chr6:15830169 0 dispersed
Csa03g02796 Csa-Chr3:26809996 Csa06g01790 Csa-Chr6:15830169 1.58E-138 dispersed
Csa05g02898 Csa-Chr5:29464400 Csa06g01790 Csa-Chr6:15830169 2.16E-170 dispersed
Csa06g01790 Csa-Chr6:15830169 Csa07g02304 Csa-Chr7:21412382 4.37E-132 dispersed
Csa03g01487 Csa-Chr3:11030190 Csa06g01790 Csa-Chr6:15830169 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01790 K01051 - csv:101221958 1128.62