Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01791 ATGGCCGACGACGACGACGATGCCTCCCTCTTATATCCGCCCTCCTACACACGTTACGCTCTCAGCGGCAAAATCATGCTCGGCGCAATCATTTTATTATTATTTGTCGTCATCCTCATGATTTGTCTTCATCTCTACGTTCGATTGTTCCTACTCTCCTCCACCCCCCGCCCATCTCGTATCCGCCGCCGTCGCCGCCGTCAACACTTTGTTTTCACTGCCGAGCCTCGAATCGCCGCCGCTGGTGTTCCGTCGCGTGGTTTGCCGCAGTCGATTCTCAAGTCCCTACCCGTTTTCGTTCACTCGGAGAAAACCGACCCGGATCCGATTTACTGTGCGGTTTGTTTATCGGAATTTGAAGAGAACGAAATCGGACGGAGTATTCCGAAATGCAACCATAGCTTCCACGTGGGGTGTATTGATATGTGGTTTTATTCCCACGCGACTTGCCCGCTTTGTAGATCTGAGGTGAAACCCGAACCCGAATGTGAGTCCGGCCCGCATGATGACCCGGGGGAGATTGCCATTGATGTCTGTGAACTGGGTTCGAGATCTGGTGAGGAAGAAACGGATCATCGGTGTCCGGTTGAGATGGCGGCGTCGGTGGAGGTGGTGGATGATGAGTCGAGGCATGTGAACGACATGTCGGATGATGGGACGTCGAGGGCAACGGTGAATTTTGTGAAGTCGTTGTCCGTTAAGGAGGAAATAGAAGCAGTCGGTTCAGAAAGATAA 735 52.65 MADDDDDASLLYPPSYTRYALSGKIMLGAIILLLFVVILMICLHLYVRLFLLSSTPRPSRIRRRRRRQHFVFTAEPRIAAAGVPSRGLPQSILKSLPVFVHSEKTDPDPIYCAVCLSEFEENEIGRSIPKCNHSFHVGCIDMWFYSHATCPLCRSEVKPEPECESGPHDDPGEIAIDVCELGSRSGEEETDHRCPVEMAASVEVVDDESRHVNDMSDDGTSRATVNFVKSLSVKEEIEAVGSER* 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15832718 15833452 - CsaV3_6G023850.1 Csa06g01791 533418

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01791 244 SUPERFAMILY RING/U-box 92 160 - -
Csa06g01791 244 PANTHER RING-H2 FINGER PROTEIN ATL64 17 194 - -
Csa06g01791 244 SMART ring_2 112 153 IPR001841 -
Csa06g01791 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 160 IPR013083 -
Csa06g01791 244 CDD RING-H2_EL5_like 112 154 - -
Csa06g01791 244 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 17 194 - -
Csa06g01791 244 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Csa06g01791 244 Pfam Ring finger domain 111 154 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01791 - - - csv:101222198 471.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00260 Csa-Chr5:1582398 Csa06g01791 Csa-Chr6:15832718 7.24E-13 dispersed
Csa06g01791 Csa-Chr6:15832718 Csa07g02302 Csa-Chr7:21391814 8.33E-30 dispersed
Csa07g01092 Csa-Chr7:10505536 Csa06g01791 Csa-Chr6:15832718 1.92E-16 transposed
Csa03g01486 Csa-Chr3:11027352 Csa06g01791 Csa-Chr6:15832718 4.39E-50 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa06g01791 . 19 192 Rapid Response to Elicitors AT3G16720 53.6 2.1e-39 159.8
Csa06g01791 . 19 192 Rapid Response to Elicitors AT3G16720 53.6 2.1e-39 159.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013742 0 1 0 0 0 1 2 1 1 1 1 1 1 1 1 0 1 0 2 1 1 0 1 1 1 1 1 2 1 0 25