Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01791 ATGGCCGACGACGACGACGATGCCTCCCTCTTATATCCGCCCTCCTACACACGTTACGCTCTCAGCGGCAAAATCATGCTCGGCGCAATCATTTTATTATTATTTGTCGTCATCCTCATGATTTGTCTTCATCTCTACGTTCGATTGTTCCTACTCTCCTCCACCCCCCGCCCATCTCGTATCCGCCGCCGTCGCCGCCGTCAACACTTTGTTTTCACTGCCGAGCCTCGAATCGCCGCCGCTGGTGTTCCGTCGCGTGGTTTGCCGCAGTCGATTCTCAAGTCCCTACCCGTTTTCGTTCACTCGGAGAAAACCGACCCGGATCCGATTTACTGTGCGGTTTGTTTATCGGAATTTGAAGAGAACGAAATCGGACGGAGTATTCCGAAATGCAACCATAGCTTCCACGTGGGGTGTATTGATATGTGGTTTTATTCCCACGCGACTTGCCCGCTTTGTAGATCTGAGGTGAAACCCGAACCCGAATGTGAGTCCGGCCCGCATGATGACCCGGGGGAGATTGCCATTGATGTCTGTGAACTGGGTTCGAGATCTGGTGAGGAAGAAACGGATCATCGGTGTCCGGTTGAGATGGCGGCGTCGGTGGAGGTGGTGGATGATGAGTCGAGGCATGTGAACGACATGTCGGATGATGGGACGTCGAGGGCAACGGTGAATTTTGTGAAGTCGTTGTCCGTTAAGGAGGAAATAGAAGCAGTCGGTTCAGAAAGATAA 735 52.65 MADDDDDASLLYPPSYTRYALSGKIMLGAIILLLFVVILMICLHLYVRLFLLSSTPRPSRIRRRRRRQHFVFTAEPRIAAAGVPSRGLPQSILKSLPVFVHSEKTDPDPIYCAVCLSEFEENEIGRSIPKCNHSFHVGCIDMWFYSHATCPLCRSEVKPEPECESGPHDDPGEIAIDVCELGSRSGEEETDHRCPVEMAASVEVVDDESRHVNDMSDDGTSRATVNFVKSLSVKEEIEAVGSER* 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15832718 15833452 - CsaV3_6G023850.1 Csa06g01791 533418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01791 244 SUPERFAMILY RING/U-box 92 160 - -
Csa06g01791 244 PANTHER RING-H2 FINGER PROTEIN ATL64 17 194 - -
Csa06g01791 244 SMART ring_2 112 153 IPR001841 -
Csa06g01791 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 160 IPR013083 -
Csa06g01791 244 CDD RING-H2_EL5_like 112 154 - -
Csa06g01791 244 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 17 194 - -
Csa06g01791 244 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Csa06g01791 244 Pfam Ring finger domain 111 154 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00260 Csa-Chr5:1582398 Csa06g01791 Csa-Chr6:15832718 7.24E-13 dispersed
Csa06g01791 Csa-Chr6:15832718 Csa07g02302 Csa-Chr7:21391814 8.33E-30 dispersed
Csa07g01092 Csa-Chr7:10505536 Csa06g01791 Csa-Chr6:15832718 1.92E-16 transposed
Csa03g01486 Csa-Chr3:11027352 Csa06g01791 Csa-Chr6:15832718 4.39E-50 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01791 - - csv:101222198 471.47