Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01816 ATGGGAGATGAGAGGCAGATACAGCACCAACAGCATAATGCAAGGCATCGGATAAGTGAAACGAATCATGATTCGTCTGAAAATAAAATTGATCCCAACGGAGGTAGGGAAAGCCAACAGAAGACTGAATCTGATGGGAGAGAGCCTGAATATTCTTTGCATAAAAATCAATCCTATAGTATTCCTATGGTTACAGAGAAACATGGCATGAAATTTTTTGTCAAATCATCAAATTTTGATGTAAGATATCCTCTTGGAAGCCCAGCTCGAGCTGAAATAGAGAACAGTGTGATAAGGGATTATCGAAACCTTCGCGTTATTGTGACAAAGGAGCCGTTGACAGTTTATGGAGATGGCAAGCAAACCCGGAGTTTTCAATACGTTTCTGATCTGGTGGAGGGGCTAATGAAACTGATGGAAGGCGAGCACGTGGGGCCTTTTAATCTGGGCAACCCCGGCGAATTCACTATGCTCGAACTTGCTCAGGTAGTGCAAGAGACAATAGATCCAAATGCAAAGATAGAGTTCAGACCGAACACGGAAGATGACCCGCATAAAAGAAAACCTGACATTTCTAAAGCTAAGGACCTTCTTGGTTGGGAGCCCACCGTGTCCCTTCGAAAGGGCCTTCCCTTATGGTTTCGGACTTTCGTCAACGCATCTTCGGTGACTCGAAAGATGACATTTCCACTGCTGCCGTCCTCTCCACCACCACCACGGTCTAGTCCCTCCTTCTTATCTCTTCTCATACCTTTTAGAATAAGAGATCTCTCAAATCACTTCCTCCCAAAGAATAACATTTGGTAG 807 44.36 MGDERQIQHQQHNARHRISETNHDSSENKIDPNGGRESQQKTESDGREPEYSLHKNQSYSIPMVTEKHGMKFFVKSSNFDVRYPLGSPARAEIENSVIRDYRNLRVIVTKEPLTVYGDGKQTRSFQYVSDLVEGLMKLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISKAKDLLGWEPTVSLRKGLPLWFRTFVNASSVTRKMTFPLLPSSPPPPRSSPSFLSLLIPFRIRDLSNHFLPKNNIW* 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15980209 15983647 + CsaV3_6G024100.1 Csa06g01816 533443

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01816 268 Pfam GDP-mannose 4,6 dehydratase 105 210 IPR016040 -
Csa06g01816 268 Gene3D - 84 221 - -
Csa06g01816 268 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 108 217 IPR044516 GO:0042732|GO:0048040|GO:0070403
Csa06g01816 268 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 104 219 IPR036291 -
Csa06g01816 268 MobiDBLite consensus disorder prediction 1 52 - -
Csa06g01816 268 Pfam Domain of unknown function (DUF1977) 46 103 IPR015399 -
Csa06g01816 268 PANTHER UDP-GLUCURONATE DECARBOXYLASE-RELATED 108 217 - -
Csa06g01816 268 MobiDBLite consensus disorder prediction 1 54 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01816 K08678 UXS1, uxs; UDP-glucuronate decarboxylase [EC:4.1.1.35] - csv:116405496 239.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00388 Csa-Chr1:2407431 Csa06g01816 Csa-Chr6:15980209 6.93E-54 dispersed
Csa06g01737 Csa-Chr6:15273235 Csa06g01816 Csa-Chr6:15980209 2.25E-28 dispersed
Csa06g01801 Csa-Chr6:15901695 Csa06g01816 Csa-Chr6:15980209 2.29E-115 dispersed
Csa06g01816 Csa-Chr6:15980209 Csa02g00318 Csa-Chr2:2172463 7.22E-12 dispersed
Csa06g01816 Csa-Chr6:15980209 Csa04g00082 Csa-Chr4:464222 1.07E-61 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g183 . . . . . . . . . Cmo17g00321 . . . . . . . . . . . . . . Cla06g00473 Cam06g0508 Cec06g0509 Cco06g0511 Clacu06g0492 Cmu06g0493 Cre06g1265 . . . . . Csa06g01816 Chy11g01517 . . . . . . . . . . . . . Cma17g00331 . . Cpe12g00281 . . . . . . . . . . . . . . . Lsi09g01438 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000444 4 3 3 5 4 3 5 3 3 4 3 3 5 3 3 5 3 9 5 3 5 4 4 3 3 4 2 8 4 4 120