Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01856 ATGTTGAATTGGCTTTTGCATTTTGCTCAAATGTTTTTGAGAGGTTGTGATGCTAATATCCACACGTTTACGCCATTAATAAAGGGTTGTTTCATGAGAGGGAAATTGTATGAAGCTCTTGACTTGTGGAAGCTTATGATACAAGATGGTTGTGAGCCAAATGTAGTTGCTTACAACACTCTGATTCATGGTCTTTGCAGTAACGGGAGTTTGGAAGAAGCCTTGCAAGTATGTGATCAGATGCAGAGGAGTGGCTGCCTTCCTAATGTGACTACTTACAGCATTCTAATTGATGGTTTCGCTAAAAGTGGTGATTTGGTCGGTGCATCCGAGACATGGAATAGGATGATATCTCATGGTTGTCGTCCTAATGTGGTGACTTATACTTGCATGGTGGATGTTCTTTGTAAAAACTCAATGTTTGACCAAGCCAATTCACTTGTGGAGAAGATGACTCTCGAAGGCTGTACTCCAAATACTATGACATTCAACACGTTTATCAAAGGTTTATGTGGAAATGGAAGAGTAGAATGGGCAATGAAACTGCTTGAACGAATGCAAGGACATGGGTGTCTTCCTAATATCACAACTTACAACGAGTTACTTGATGCTCTTTTCAGGATGAACAAGTATGAAGAGGCTTTTGGGCTATTTCAGGAAATTGAAGCAAGAAATTTACAGCCGAACTTAGTGACATATAATACCGTTTTATATGGTTTTTCTCGGGCTGGCATGATGGGGGAGGCGTTGCAGCTTTTTGGTAAAGCACTTGTTAGGGGAACTGCCCCTGATTCCATCACGTATAATACAATGATACATGCCTATTGCAAGCAGGGGAAGGTTAAGATCGCAGCTCAATTGGTGGAACGAGTTAGTTCTATGAAGGAGTGGCATCCAGATATCATTACATACACTAGCCTCATTTGGGGTGCCTGCAATTGGATGAATATAGAAGAAGCCATGGCTTTTCTTGACAAGGCAATTAATCAAGGAATCTGTCCCAACTTTGCCACATGGAATGCATTAGTTCGGTGTTTCTTTCGACTCTTTAGGTCATATGGGACCAATTCATATTCTGGATGA 1083 41.09 MLNWLLHFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCFFRLFRSYGTNSYSG* 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 16754642 16755724 - CsaV3_6G028460.1 Csa06g01856 533483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01856 360 Gene3D Tetratricopeptide repeat domain 100 207 IPR011990 GO:0005515
Csa06g01856 360 Pfam PPR repeat 190 221 IPR002885 -
Csa06g01856 360 PANTHER ATPASE EXPRESSION PROTEIN 3 8 350 - -
Csa06g01856 360 Pfam PPR repeat 22 51 IPR002885 -
Csa06g01856 360 Gene3D Tetratricopeptide repeat domain 2 84 IPR011990 GO:0005515
Csa06g01856 360 SUPERFAMILY HCP-like 65 331 - -
Csa06g01856 360 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 228 IPR002885 -
Csa06g01856 360 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 89 123 IPR002885 -
Csa06g01856 360 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Csa06g01856 360 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 124 158 IPR002885 -
Csa06g01856 360 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 54 88 IPR002885 -
Csa06g01856 360 PANTHER OS05G0132000 PROTEIN 8 350 - -
Csa06g01856 360 TIGRFAM PPR: pentatricopeptide repeat domain 197 229 IPR002885 -
Csa06g01856 360 TIGRFAM PPR: pentatricopeptide repeat domain 302 335 IPR002885 -
Csa06g01856 360 TIGRFAM PPR: pentatricopeptide repeat domain 126 160 IPR002885 -
Csa06g01856 360 TIGRFAM PPR: pentatricopeptide repeat domain 21 55 IPR002885 -
Csa06g01856 360 TIGRFAM PPR: pentatricopeptide repeat domain 231 264 IPR002885 -
Csa06g01856 360 TIGRFAM PPR: pentatricopeptide repeat domain 162 195 IPR002885 -
Csa06g01856 360 TIGRFAM PPR: pentatricopeptide repeat domain 266 294 IPR002885 -
Csa06g01856 360 TIGRFAM PPR: pentatricopeptide repeat domain 92 125 IPR002885 -
Csa06g01856 360 TIGRFAM PPR: pentatricopeptide repeat domain 56 90 IPR002885 -
Csa06g01856 360 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 294 IPR002885 -
Csa06g01856 360 Pfam PPR repeat family 123 171 IPR002885 -
Csa06g01856 360 Pfam PPR repeat family 53 102 IPR002885 -
Csa06g01856 360 Pfam PPR repeat family 228 277 IPR002885 -
Csa06g01856 360 Pfam Pentatricopeptide repeat domain 298 345 IPR002885 -
Csa06g01856 360 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 19 53 IPR002885 -
Csa06g01856 360 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Csa06g01856 360 Gene3D Tetratricopeptide repeat domain 208 355 IPR011990 GO:0005515
Csa06g01856 360 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 193 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01856 - - - csv:101220387 735.717
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01856 Csa-Chr6:16754642 Csa04g01469 Csa-Chr4:14513202 1.59E-20 dispersed
Csa06g01856 Csa-Chr6:16754642 Csa02g02226 Csa-Chr2:19992380 3.38E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g36 . . . Bda08g00324 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g01856 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008622 1 3 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 31