Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01860 ATGGGAACTGCCGGGGGATTCCGTCCAATTCCTGGTCCTGGGGATGGTGGTTTTGGGTCCGGTTTCCAACCGCCACCTGTTGTTGGACAGAAACGGGGTTACCCTTTTGCCGGCCGTGGAAGTTCTCCAGATCATTCCGATGGAAGCAATTTTGCCAAGCTATTTGTTGGATCGGTTCCAAGGACAGCCACGGAAGAAATTATTCGTCCATTGTTTGAAGAACATGGAAATGTGATTGAAGTAGCTTTGATAAAGGATAAGAGAACAGGCCAACAACAAGGATGTTGTTTTGTAAAATATACTACCTCAGAAGAAGCTGATAGAGCAATTAGGAACCTGCACAATCAACATACCCTTCCTGGGGGAGTGGGCCCGATTCAAGTTAGATATGCTGATGGTGAGCGAGAGCGCCTTGGTGCAGTTGAGTACAAATTGTTTGTTGGTTCACTAAATAAACAAGCTTCAGAAAAAGAAGTCAAGGAAATCTTTTCTCCCTATGGAGTAGTTGAAGATGTTTATCTAATGCGGGATGAAATGAAACAGAGTCGTGGGTGTGGATTTGTGAAGTATTCACATAGGGACATGGCACTGGCGGCTATAAATGCTCTTAATGGAATTTTTACAATGAGAGGTTGTGATCAACCATTAAGTGTCCGCTTTGCTGACCCAAAGAAGCCCAGACCTGGAGATTCAAGGGGCACTCCTGCATTTGGAGGTCCAGGCTTTGGCTCTCGCTTTCAACCACCTGGGCCAAGACCAACACCTAATTTTGGTGAATTTATGGGTGATCGAATTCCAATTGATGTACGAGGTTTCAGGCCACCCATTGATGCTGGTATTCATCCCTTTGGGGGTCAGTTGCCACCTAGGTCCAGTGAAATGGGACTACCTTTGAATTTGGGTGGTCTTGCTGGTGGGTTTAGAGGTCCCAATCAAGGGTTAGTCAATCCAGCATCTTCAGCTTCTCAACAGAATTTTAATCAGTCTGCAAGCCAACATCCACCGCCTGGTCTGCAAGTGTCGCCAGTGTTAAAAACTTCTCAGTCGCCTAAACAATTGCCACCTTCGAATCAATTGCACTCTCATGCCCTTACCTATTCTCAGACACAGACATCTCCAGCATTAGCGCAACAGCATAATCAACCACAAAACTTCAATTCTTCTGGTCAACTGCCCTTTAGTCAGCCTGCACCCTCCCAGGAGTCACCTGGCTTAGGTGGGCAGTTGGCGGTATCTCAGTCTATGGGTGCCTCATCTGCTGCAGCTACACATACTCCTTTGAGTATGAATTTACAATCCCATGCTGCTGCCCCGAGTCAACAGCAACTACCTACGCCAATTCAACCACCTCAGAATTCACCTTCTCAGTTAGCACACATGCTGTCACAACAAAAACAAACTCTACAGGCTAGGTTCCAGTCTTCCCAGCAGGCATTCTCACAGCTACAACAGCAGTTGCAGCTGATACAACCACCAAATCAAAGTTCAACTTTGCAACCGAGTTCCCAGACTATTAAGCAGCAGCCTCATTGGGCAGGGGTTGTGACACATACAGCTGCCAGTGCCGCTTCCGCCACTTCAGATGCACATACATCTACTGTTCCTCCTGCAGCTATAAACACCCAAGTTGTTGCTCCTGTAAAATGCAATTGGACAGAGCACACATCTCCTGATGGCTATAAATACTACTATAACAGTGTTACCGGTGAGAGCAAGTGGGAGAGACCTGAAGAGCTTTCAGTGATTGAGCAACAACAACAAAAGCCACCAATACTGCAGCCCCATAACCAGCCACATCCCCAACTGCTATCAACCCAGCAACTTTCTCAAACTCCCCAAGCCCAGCTTCAAACTCAGTTCCAGACACAGTCACAGATGCCCCATCCTCAGCCGCTGCAGCAACCTTCATTCCATTCACAGGAAGGTGCATATACACAAATGCAGCCAGCGAATAACTCAATAAATGATCCTACTCGCTTCCATCAGGGATTTCCCACGACTCAAGAGTGGGCATGGAAGAATAAATAA 2028 46.94 MGTAGGFRPIPGPGDGGFGSGFQPPPVVGQKRGYPFAGRGSSPDHSDGSNFAKLFVGSVPRTATEEIIRPLFEEHGNVIEVALIKDKRTGQQQGCCFVKYTTSEEADRAIRNLHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQASEKEVKEIFSPYGVVEDVYLMRDEMKQSRGCGFVKYSHRDMALAAINALNGIFTMRGCDQPLSVRFADPKKPRPGDSRGTPAFGGPGFGSRFQPPGPRPTPNFGEFMGDRIPIDVRGFRPPIDAGIHPFGGQLPPRSSEMGLPLNLGGLAGGFRGPNQGLVNPASSASQQNFNQSASQHPPPGLQVSPVLKTSQSPKQLPPSNQLHSHALTYSQTQTSPALAQQHNQPQNFNSSGQLPFSQPAPSQESPGLGGQLAVSQSMGASSAAATHTPLSMNLQSHAAAPSQQQLPTPIQPPQNSPSQLAHMLSQQKQTLQARFQSSQQAFSQLQQQLQLIQPPNQSSTLQPSSQTIKQQPHWAGVVTHTAASAASATSDAHTSTVPPAAINTQVVAPVKCNWTEHTSPDGYKYYYNSVTGESKWERPEELSVIEQQQQKPPILQPHNQPHPQLLSTQQLSQTPQAQLQTQFQTQSQMPHPQPLQQPSFHSQEGAYTQMQPANNSINDPTRFHQGFPTTQEWAWKNK* 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 16769900 16782950 + CsaV3_6G028500.1 Csa06g01860 533487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01860 675 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 52 133 IPR000504 GO:0003723
Csa06g01860 675 SUPERFAMILY RNA-binding domain, RBD 28 137 IPR035979 GO:0003676
Csa06g01860 675 MobiDBLite consensus disorder prediction 313 442 - -
Csa06g01860 675 MobiDBLite consensus disorder prediction 606 675 - -
Csa06g01860 675 CDD RRM2_FCA 144 223 IPR034645 -
Csa06g01860 675 Coils Coil 465 485 - -
Csa06g01860 675 SMART ww_5 546 578 IPR001202 GO:0005515
Csa06g01860 675 PANTHER FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1 23 647 - -
Csa06g01860 675 SUPERFAMILY RNA-binding domain, RBD 143 250 IPR035979 GO:0003676
Csa06g01860 675 PANTHER TRANSFORMER-2-RELATED 23 647 - -
Csa06g01860 675 MobiDBLite consensus disorder prediction 222 259 - -
Csa06g01860 675 SMART rrm1_1 53 129 IPR000504 GO:0003723
Csa06g01860 675 SMART rrm1_1 144 219 IPR000504 GO:0003723
Csa06g01860 675 ProSiteProfiles WW/rsp5/WWP domain profile. 545 578 IPR001202 GO:0005515
Csa06g01860 675 MobiDBLite consensus disorder prediction 582 600 - -
Csa06g01860 675 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 145 208 IPR000504 GO:0003723
Csa06g01860 675 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 54 117 IPR000504 GO:0003723
Csa06g01860 675 MobiDBLite consensus disorder prediction 309 458 - -
Csa06g01860 675 MobiDBLite consensus disorder prediction 581 600 - -
Csa06g01860 675 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 143 223 IPR000504 GO:0003723
Csa06g01860 675 Gene3D - 138 229 IPR012677 -
Csa06g01860 675 Gene3D - 547 590 - -
Csa06g01860 675 CDD WW 548 578 IPR001202 GO:0005515
Csa06g01860 675 Pfam WW domain 549 576 IPR001202 GO:0005515
Csa06g01860 675 Gene3D - 40 137 IPR012677 -
Csa06g01860 675 SUPERFAMILY WW domain 550 582 IPR036020 GO:0005515
Csa06g01860 675 MobiDBLite consensus disorder prediction 1 49 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01860 - - - csv:101205530 1218.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02452 Csa-Chr3:22718295 Csa06g01860 Csa-Chr6:16769900 3.77E-15 dispersed
Csa06g01860 Csa-Chr6:16769900 Csa07g01743 Csa-Chr7:17845898 5.09E-48 dispersed
Csa06g01860 Csa-Chr6:16769900 Csa06g00937 Csa-Chr6:7542680 1.92E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g46 Blo01g00037 Blo12g00030 Bda03g01189 . Bpe04g01123 . Bma04g01118 Bma05g01000 . Cmo17g00369 . . . . . . . . . . . . . . Cla06g00417 Cam06g0439 Cec06g0445 Cco06g0444 Clacu06g0426 Cmu06g0425 Cre06g1204 . Cone15ag0721 . . . Csa06g01860 . . . . . . . . . . . . . . Cma17g00380 . Car17g00351 Cpe12g00332 Cpe17g00076 Bhi12g01943 . . . . . Lcy12g0865 . . . . . . . Lsi09g01506 . . Cme11g02092
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007086 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 37