Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g01861 | ATGGAGGAAGAGAAGATCAAGGAAGAAGTGTTGAGAAACAATAGAGATCAGAATTCGATGGGAAATCCTGGATTGTTATTCTCCGATGCGATTATTCCCAATAATCATACTACTAATTTGTTCGATTTTCCATTAATCGACACCATTGATTCTTCTTTCAAGCCGTCCACTTTCTTGGATTTATTGAAAGCAAAAAAGAAAAACCAAAAGAAAGGAAGAGAACCAAGATTTGCGTTCATGACAAAAAGCGAAGTGGATCATTTAGACGACGGTTACAGATGGCGAAAATACGGTCAAAAAGCCGTTAAAAACAGCCCTTACCCAAGAAGTTATTACCGTTGCACCACCGCCGGCTGCGGCGTCAAAAAACGAGTCGAACGATCCTCCGACGACCCTTCCATCGTCGTCACCACTTACGAAGGCCAACACACTCATCAAAGTCCAATCATGCCACGTGGAGCTTTATCCTCCACCGCCTTCACCCCCTCACCACAACAACAACCCCCGCTTGTTTTCTCACAGCCCCAACAATTATACCGCAACCAATTTACGTACGCTCCGGCGCCGCCTGCGGACGTTGTCACCTGCGGCGGAGGGTTCGGTCACTCAGGAGGACCCTTTTGGAAAGTTGAATTTGGAAGAGGGGATAGCATAAGTGCCAGCAAATCAGCAGCACAAAACAACATTCCTGGCCCAAACTCCACTGTAGCTACCTTAGTTACTAAGTTCCAGAACCTTGGCCTTTCTCTAAGAGATATGGTTGCTCTCTCAGGGGGACACACACTGGGAAAAGCCAGATGTACTTCATTCAGTTCTAGGCTACAAACGAACGGAGGCAGCCCCAATGAAGGAGCAAACCAAGAGTTTATAGAGTCATTAAAACAGCTCTGCTCGGCACCTGGTAGTAGTTCAACACTGGCACAGCTCGACATTGTAACCCCAGCTACATTTGACAACCAGTACTATATTAATCTTCTCTCTGGAGAAGGGTTACTCCAGTCTGATCATGTTCTTGTGACTGGGGATTACCAAACAAGAGAGATAGTCGAAACCTATGCCGTCGACCCAGTTGCCTTCTTTGAAGATTTCAAACAGTCAATGGTGAAGATGGGAAGCCTAAAACCACCTGCTGGAACACAGACCGTGATCCGAACTAATTGTCGAACTACAAACTCCCTTGAAGCATTGCTCATCTTATCTGTGGTTTCTGTACCTTACAAAGCTGTTACTCTCTGCCTTAGAACTTATATCTTCATTTCACAACTTGAATGGCAGATGCATGCAGATCCCATTGTTCCACTTCAAGTTCCTGAAGACCAAATAGTTCTAATTTCTATCATAGAAAACGAGGCTACGTAA | 1359 | 45.11 | MEEEKIKEEVLRNNRDQNSMGNPGLLFSDAIIPNNHTTNLFDFPLIDTIDSSFKPSTFLDLLKAKKKNQKKGREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSIVVTTYEGQHTHQSPIMPRGALSSTAFTPSPQQQPPLVFSQPQQLYRNQFTYAPAPPADVVTCGGGFGHSGGPFWKVEFGRGDSISASKSAAQNNIPGPNSTVATLVTKFQNLGLSLRDMVALSGGHTLGKARCTSFSSRLQTNGGSPNEGANQEFIESLKQLCSAPGSSSTLAQLDIVTPATFDNQYYINLLSGEGLLQSDHVLVTGDYQTREIVETYAVDPVAFFEDFKQSMVKMGSLKPPAGTQTVIRTNCRTTNSLEALLILSVVSVPYKAVTLCLRTYIFISQLEWQMHADPIVPLQVPEDQIVLISIIENEAT* | 453 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 16783402 | 16791738 | - | CsaV3_6G028510.1 | Csa06g01861 | 533488 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g01861 | 452 | PRINTS | Haem peroxidase superfamily signature | 204 | 216 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa06g01861 | 452 | PRINTS | Haem peroxidase superfamily signature | 252 | 267 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa06g01861 | 452 | PRINTS | Haem peroxidase superfamily signature | 310 | 325 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa06g01861 | 452 | Pfam | Peroxidase | 201 | 354 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa06g01861 | 452 | ProSiteProfiles | WRKY domain profile. | 83 | 148 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Csa06g01861 | 452 | Gene3D | Peroxidase, domain 2 | 230 | 371 | - | - | |
Csa06g01861 | 452 | SMART | WRKY_cls | 88 | 147 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Csa06g01861 | 452 | Gene3D | WRKY domain | 73 | 149 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Csa06g01861 | 452 | PANTHER | PEROXIDASE 72-RELATED | 203 | 389 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa06g01861 | 452 | SUPERFAMILY | WRKY DNA-binding domain | 80 | 148 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Csa06g01861 | 452 | ProSiteProfiles | Plant heme peroxidase family profile. | 111 | 391 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa06g01861 | 452 | ProSitePatterns | Peroxidases proximal heme-ligand signature. | 252 | 262 | IPR019793 | - | |
Csa06g01861 | 452 | PANTHER | PEROXIDASE 40 | 203 | 389 | - | - | |
Csa06g01861 | 452 | SUPERFAMILY | Heme-dependent peroxidases | 191 | 391 | IPR010255 | GO:0004601|GO:0006979|GO:0020037 | |
Csa06g01861 | 452 | PRINTS | Plant peroxidase signature | 365 | 378 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa06g01861 | 452 | PRINTS | Plant peroxidase signature | 324 | 341 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa06g01861 | 452 | PRINTS | Plant peroxidase signature | 308 | 323 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa06g01861 | 452 | PRINTS | Plant peroxidase signature | 204 | 219 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa06g01861 | 452 | PRINTS | Plant peroxidase signature | 251 | 263 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa06g01861 | 452 | Gene3D | - | 202 | 391 | - | - | |
Csa06g01861 | 452 | Pfam | WRKY DNA -binding domain | 89 | 146 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa03g01529 | Csa06g01861 | CCT | |
Csa03g01529 | Csa06g01861 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g01556 | Csa-Chr2:14723306 | Csa06g01861 | Csa-Chr6:16783402 | 1.64E-29 | dispersed | |
Csa03g01529 | Csa-Chr3:11362956 | Csa06g01861 | Csa-Chr6:16783402 | 4.58E-52 | dispersed | |
Csa06g01861 | Csa-Chr6:16783402 | Csa06g03285 | Csa-Chr6:27565675 | 2.89E-51 | dispersed | |
Csa06g02834 | Csa-Chr6:24728797 | Csa06g01861 | Csa-Chr6:16783402 | 2.52E-32 | dispersed | |
Csa06g02842 | Csa-Chr6:24809801 | Csa06g01861 | Csa-Chr6:16783402 | 4.01E-33 | dispersed | |
Csa06g03763 | Csa-Chr6:29962063 | Csa06g01861 | Csa-Chr6:16783402 | 6.14E-45 | dispersed | |
Csa06g01861 | Csa-Chr6:16783402 | Csa04g00543 | Csa-Chr4:3606838 | 3.78E-53 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32041 | PF00141 | peroxidase | 7.50E-40 | CL0617 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g01861 | K00430 | - | csv:101205763 | 375.941 |