Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01861 ATGGAGGAAGAGAAGATCAAGGAAGAAGTGTTGAGAAACAATAGAGATCAGAATTCGATGGGAAATCCTGGATTGTTATTCTCCGATGCGATTATTCCCAATAATCATACTACTAATTTGTTCGATTTTCCATTAATCGACACCATTGATTCTTCTTTCAAGCCGTCCACTTTCTTGGATTTATTGAAAGCAAAAAAGAAAAACCAAAAGAAAGGAAGAGAACCAAGATTTGCGTTCATGACAAAAAGCGAAGTGGATCATTTAGACGACGGTTACAGATGGCGAAAATACGGTCAAAAAGCCGTTAAAAACAGCCCTTACCCAAGAAGTTATTACCGTTGCACCACCGCCGGCTGCGGCGTCAAAAAACGAGTCGAACGATCCTCCGACGACCCTTCCATCGTCGTCACCACTTACGAAGGCCAACACACTCATCAAAGTCCAATCATGCCACGTGGAGCTTTATCCTCCACCGCCTTCACCCCCTCACCACAACAACAACCCCCGCTTGTTTTCTCACAGCCCCAACAATTATACCGCAACCAATTTACGTACGCTCCGGCGCCGCCTGCGGACGTTGTCACCTGCGGCGGAGGGTTCGGTCACTCAGGAGGACCCTTTTGGAAAGTTGAATTTGGAAGAGGGGATAGCATAAGTGCCAGCAAATCAGCAGCACAAAACAACATTCCTGGCCCAAACTCCACTGTAGCTACCTTAGTTACTAAGTTCCAGAACCTTGGCCTTTCTCTAAGAGATATGGTTGCTCTCTCAGGGGGACACACACTGGGAAAAGCCAGATGTACTTCATTCAGTTCTAGGCTACAAACGAACGGAGGCAGCCCCAATGAAGGAGCAAACCAAGAGTTTATAGAGTCATTAAAACAGCTCTGCTCGGCACCTGGTAGTAGTTCAACACTGGCACAGCTCGACATTGTAACCCCAGCTACATTTGACAACCAGTACTATATTAATCTTCTCTCTGGAGAAGGGTTACTCCAGTCTGATCATGTTCTTGTGACTGGGGATTACCAAACAAGAGAGATAGTCGAAACCTATGCCGTCGACCCAGTTGCCTTCTTTGAAGATTTCAAACAGTCAATGGTGAAGATGGGAAGCCTAAAACCACCTGCTGGAACACAGACCGTGATCCGAACTAATTGTCGAACTACAAACTCCCTTGAAGCATTGCTCATCTTATCTGTGGTTTCTGTACCTTACAAAGCTGTTACTCTCTGCCTTAGAACTTATATCTTCATTTCACAACTTGAATGGCAGATGCATGCAGATCCCATTGTTCCACTTCAAGTTCCTGAAGACCAAATAGTTCTAATTTCTATCATAGAAAACGAGGCTACGTAA 1359 45.11 MEEEKIKEEVLRNNRDQNSMGNPGLLFSDAIIPNNHTTNLFDFPLIDTIDSSFKPSTFLDLLKAKKKNQKKGREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSIVVTTYEGQHTHQSPIMPRGALSSTAFTPSPQQQPPLVFSQPQQLYRNQFTYAPAPPADVVTCGGGFGHSGGPFWKVEFGRGDSISASKSAAQNNIPGPNSTVATLVTKFQNLGLSLRDMVALSGGHTLGKARCTSFSSRLQTNGGSPNEGANQEFIESLKQLCSAPGSSSTLAQLDIVTPATFDNQYYINLLSGEGLLQSDHVLVTGDYQTREIVETYAVDPVAFFEDFKQSMVKMGSLKPPAGTQTVIRTNCRTTNSLEALLILSVVSVPYKAVTLCLRTYIFISQLEWQMHADPIVPLQVPEDQIVLISIIENEAT* 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 16783402 16791738 - CsaV3_6G028510.1 Csa06g01861 533488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01861 452 PRINTS Haem peroxidase superfamily signature 204 216 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g01861 452 PRINTS Haem peroxidase superfamily signature 252 267 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g01861 452 PRINTS Haem peroxidase superfamily signature 310 325 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g01861 452 Pfam Peroxidase 201 354 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g01861 452 ProSiteProfiles WRKY domain profile. 83 148 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa06g01861 452 Gene3D Peroxidase, domain 2 230 371 - -
Csa06g01861 452 SMART WRKY_cls 88 147 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa06g01861 452 Gene3D WRKY domain 73 149 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa06g01861 452 PANTHER PEROXIDASE 72-RELATED 203 389 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01861 452 SUPERFAMILY WRKY DNA-binding domain 80 148 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa06g01861 452 ProSiteProfiles Plant heme peroxidase family profile. 111 391 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g01861 452 ProSitePatterns Peroxidases proximal heme-ligand signature. 252 262 IPR019793 -
Csa06g01861 452 PANTHER PEROXIDASE 40 203 389 - -
Csa06g01861 452 SUPERFAMILY Heme-dependent peroxidases 191 391 IPR010255 GO:0004601|GO:0006979|GO:0020037
Csa06g01861 452 PRINTS Plant peroxidase signature 365 378 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01861 452 PRINTS Plant peroxidase signature 324 341 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01861 452 PRINTS Plant peroxidase signature 308 323 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01861 452 PRINTS Plant peroxidase signature 204 219 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01861 452 PRINTS Plant peroxidase signature 251 263 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01861 452 Gene3D - 202 391 - -
Csa06g01861 452 Pfam WRKY DNA -binding domain 89 146 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g01529 Csa06g01861 CCT
Csa03g01529 Csa06g01861 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01556 Csa-Chr2:14723306 Csa06g01861 Csa-Chr6:16783402 1.64E-29 dispersed
Csa03g01529 Csa-Chr3:11362956 Csa06g01861 Csa-Chr6:16783402 4.58E-52 dispersed
Csa06g01861 Csa-Chr6:16783402 Csa06g03285 Csa-Chr6:27565675 2.89E-51 dispersed
Csa06g02834 Csa-Chr6:24728797 Csa06g01861 Csa-Chr6:16783402 2.52E-32 dispersed
Csa06g02842 Csa-Chr6:24809801 Csa06g01861 Csa-Chr6:16783402 4.01E-33 dispersed
Csa06g03763 Csa-Chr6:29962063 Csa06g01861 Csa-Chr6:16783402 6.14E-45 dispersed
Csa06g01861 Csa-Chr6:16783402 Csa04g00543 Csa-Chr4:3606838 3.78E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32041 PF00141 peroxidase 7.50E-40 CL0617 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01861 K00430 - csv:101205763 375.941