Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01863 ATGGCGTCATCTGTTCTTTCGAACTCCGATCGTGCACGGGAGTCTTCTTCGAGGAAGCAAAAGAAGAAGAAAAGCCATGGCAATAGAGATCATCATCAAAACCAGAATCATCATATTAAATGGAAATCTCAAGCTCAACAGGAAATTTACTCATCTAAGCTAGTACGAGCATTGAATCAAGTCAGACTCGGTCCTTCAAACGAGGCGCCGCCACGCCGCGGCAGAGCTGTACGTGAAGCCGCCGATAGAGTCCTTGCCGTTGCCGCCAAGGGGAGAACTAGATGGAGTCGAGCCATATTAACGAACAGGTTGAAGCTCAAGTTCAGGAAGGCGCCAAAGAGACAGAGATCAACATCCACCGCTGGAAACAACCGCTCAAAGAAACCTAGAGTCAGCGTATTGCGGTTGAGAGGGAAATCCTTGCCGGCAGTACAAAGGAAAGTTAGGGTCCTTGGTCGGCTGGTTCCCGGTTGCCGGAAAGAACCATTGCCGGTTATTCTGGAAGAAGCTACCGATTACATAGCTGCACTTGAAATGCAAGTTCGAGCCATGAGTGCCCTTGCTGAGTTGCTCTCGGCTTCAACTTCTGCTGCAGGCTCTAGTTCATCTCCTCCAAGCTGA 621 49.76 MASSVLSNSDRARESSSRKQKKKKSHGNRDHHQNQNHHIKWKSQAQQEIYSSKLVRALNQVRLGPSNEAPPRRGRAVREAADRVLAVAAKGRTRWSRAILTNRLKLKFRKAPKRQRSTSTAGNNRSKKPRVSVLRLRGKSLPAVQRKVRVLGRLVPGCRKEPLPVILEEATDYIAALEMQVRAMSALAELLSASTSAAGSSSSPPS* 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 16812784 16815830 - CsaV3_6G028530.1 Csa06g01863 533490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01863 206 MobiDBLite consensus disorder prediction 1 46 - -
Csa06g01863 206 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 16 205 IPR044660 GO:0006355
Csa06g01863 206 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 195 IPR036638 GO:0046983
Csa06g01863 206 PANTHER TRANSCRIPTION FACTOR BHLH148-LIKE ISOFORM X1 16 205 - -
Csa06g01863 206 MobiDBLite consensus disorder prediction 17 38 - -
Csa06g01863 206 MobiDBLite consensus disorder prediction 109 130 - -
Csa06g01863 206 CDD bHLH_AtIBH1_like 133 188 IPR044549 GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00511 Csa-Chr2:3606325 Csa06g01863 Csa-Chr6:16812784 9.50E-44 dispersed
Csa03g01527 Csa-Chr3:11336382 Csa06g01863 Csa-Chr6:16812784 6.31E-75 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01863 - - csv:101220618 341.273