Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01866 ATGCTCCGGGAATTCATGAATCTGCTCTCTCTTTGTTGGAAGCCTTTTGGGCATCCTACTGATAATTTCACCTCTGTTGGTGTTATTGGGACCAATTGTGGTGCCAAAGACACCAAAGACACCTTACTTTGGTTCTATGATTATGGTCATTATGCTTCCGGTGACTTCTCCATGGCTGTTGTTCAAGCCAACCAAGTCCTTGAAGACCAGAGCCAAATTGAATCTGGCCCTTTTGGTACTTTCCTCGGTATCTACGATGGTCATGGCGGTCCCGACGCTGCTCGTTATGTTTGTGATAACTTGTTTAGACGTTTCCAAGAAGAACATCAGGGAGTGGTGACTCGTGAAACCATTCTGAACGCTTTTCGTCGAACAGAAGAAGGGTTCACGGCTGTCGTGTCAGAGTTATGGAGTACTCAACCCCAGATAGCAACAGTTGGGACGTGCTGTCTAGTAGGGGTTATACACGAGCAGACACTCTACATTGCGAGCCTGGGGGATTCTCGTGCTGTGTTAGGGAAGAAAGTTGGCAACACTGGTGAGATTGCTGCCATTCAATTATCAACTGAGCATAATGCAAATCTTGACGAAATCAGGCAAGAGTTAAGCGAGATGCATCCAAATGACCCTCAAATTGTGGTCCAAAGACATGGAGTTTGGAGAGTGAAAGGAATTATACAGGTTTCTAGATCCATTGGGGATGTCTATTTGAAGCATGCTCAGTATAATAATGAAAGAATCAATGCTAAATTTAGGCTTCCTGAGCCAATTGATATGCCTATATTGACTGCTGTACCTACAATTATTGCTCACCCTCTTCATCAAAACGATTCTTTTCTCATATTTGCATCTGATGGACTTTGGGAACACCTAACCAATGAAAAAGCAGTGGATATTGTTCATAATCATCCACGTGCAGGAAGTGCAAAAAGGCTTGTGAAGGCAGCCCTTCAAGAAGCAGCTCGAAAACGAGAGATGCGGTATTCAGATCTCCGAAAGATTGACAAGAAAGTTCGGCGTCATTTCCACGATGACATTAGTGTTATCGTTTTATTTTTCAACCACGATCTTATATCCAGAAACAATGTCCACCTAGATCAACCATTATCAGTAAGAAGTGCTTTTGATCATTGA 1134 43.12 MLREFMNLLSLCWKPFGHPTDNFTSVGVIGTNCGAKDTKDTLLWFYDYGHYASGDFSMAVVQANQVLEDQSQIESGPFGTFLGIYDGHGGPDAARYVCDNLFRRFQEEHQGVVTRETILNAFRRTEEGFTAVVSELWSTQPQIATVGTCCLVGVIHEQTLYIASLGDSRAVLGKKVGNTGEIAAIQLSTEHNANLDEIRQELSEMHPNDPQIVVQRHGVWRVKGIIQVSRSIGDVYLKHAQYNNERINAKFRLPEPIDMPILTAVPTIIAHPLHQNDSFLIFASDGLWEHLTNEKAVDIVHNHPRAGSAKRLVKAALQEAARKREMRYSDLRKIDKKVRRHFHDDISVIVLFFNHDLISRNNVHLDQPLSVRSAFDH* 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 16831535 16835977 - CsaV3_6G028560.1 Csa06g01866 533493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01866 377 SUPERFAMILY PP2C-like 64 354 IPR036457 -
Csa06g01866 377 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Csa06g01866 377 CDD PP2Cc 56 353 IPR001932 -
Csa06g01866 377 ProSiteProfiles PPM-type phosphatase domain profile. 55 353 IPR001932 -
Csa06g01866 377 PANTHER ALPHABET, ISOFORM E-RELATED 4 377 - -
Csa06g01866 377 PANTHER PROTEIN PHOSPHATASE 2C 42-RELATED 4 377 - -
Csa06g01866 377 SMART PP2C_4 47 351 IPR001932 -
Csa06g01866 377 Gene3D - 48 364 IPR036457 -
Csa06g01866 377 Pfam Protein phosphatase 2C 80 323 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01866 Csa-Chr6:16831535 Csa06g03363 Csa-Chr6:28014814 6.67E-147 dispersed
Csa06g01866 Csa-Chr6:16831535 Csa02g01405 Csa-Chr2:13428092 2.05E-158 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01866 K01102 - csv:101207284 770.385