Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01870 ATGGGAACTCCACCAGCAGAGGAGCTTCTGAGGAAGGTCCAAGAGCTGGAGGAGGGTCAAGCGCATCTCAAGAAAGAGATGTCCAAACTTCTTCTCTCAGGAACTGCTGCCGATTCCAACTCCGACCACCAAATCCACCATCACCACCATCACCATCAACGTTCTCAATCCATATCACCTCAACGTTCTAGATTTGCTGCCACTCGTAGAAGAGGTGGCACTACCGGAGGTTTAGACGGCGCTGCTGCAGCCTGGAAAAGAGGCTCTTCCTCGTTTCGACATTCTTCTCCTCTTCAGAGAGAGAGTAGAACTCGCGACCCTATGAATCCCGCCGCCGCCGCCGCCGCAGACGGCGGCGGCGGCTGCTCTGGCCCCGCCGCTGTGAATTTCACCAACAAACAGTATCTAAATATCTTACAGTCACTGGGACAGCCTGTTTATATTTTTGACCTTAATTATCACATAATTTACTGGAACCGAGCTGCTGAAATTGTATATGGGTATTCTGCGGCGGAGGCTCTTGGTCAGGATGCCATTGAACTTCTAGTAGATCCTGAGGATTTCGCCATTACAAACCATGTCATTCTTCGTGTAATGGCGGGTGAGAATTGGACTGGTCATTTACCTGTAAAGAACAAGATGGGGCAAAAATTTGTAGTTGTTGCTACCAACACTCCATTCTACGACGATGGTGCATTGATTGGGATTATTTGTATATCCAGCGATTCCCGGCCATTTCAAGATTTGAAGATTCCTTTATCAATAGGTTCTAAACAGCAGGATGCAGATTCAAGCATGGTTCGATCACGAGTCCCGGTTTCGGTTAAGCTTGGTCTTGATCCTCAGCAGCCTCTTCAAGTGGCAATCGCTTCGAAGTTATCGAATTTGGCATCAAAAGTAAGCAACAAAGTCAAGTCCAAAATTCGAACTGGAGAAAACAGCTTGGATCGTGAAGGTGGAAGTGGAGATGGTTATCACTCTGATCATGGCCATCCGGATGCAGTTCTTTGTGATAATCGGGATGATGCAAATTCGAGTGGAGCTAGCACGCCACGAGGAGATTCCACGGCTCATGGTGCATTTTCCCAGGTTGAAGAGAAGTTATCTGGGAGACTGGTGAGGGATTCTAGTGATGAGGGTAAGGGAAAACCTACCATCCAGAAGATTTTATCCTCAAAGGCAGAAGAATGGATTGCCAAGAAAGGCTTATCGTGGCCGTGGAAAGGGACTGAGCAGGAAGGAGGATCTGAAACAAGAGCAGCCCGTTTCGTTTGGCCTTGGGTACAAATTGATCAAGAAGCTGAACCAGCTAATCATAAGAGTTCATCTATATCTGGTAAACTAGAAATGCAGCAAAATGACGGTCATCGAGCAGTCAATAATGAGGCATCGGGATCTTGGTCATCGATCAATATTAACAGCACTAGCAGTGTAAGTAGCTGTGGGAGTACCAGTAGTAGTGCTGTCAACAAGGTTGAGTCGGACATGGACTGCTTGGATCATGAAATCTTGTGGGAAGACCTTACCATTGGGGAGCAAATAGGACAAGGTTCTTGTGGAACTGTCTATCATGCACTGTGGTATGGATCAGATGTTGCCGTTAAAGTGTTCTCCAAACAAGAGTATTCAGATGATGTGATTCTCTCCTTCAAACAGGAGGTATCCCTGATGAAAAAGCTTAGACATCCCAATATTCTTCTCTTTATGGGAGTAGTGACTTCACCTCAGCGTCTCTGCATTGTCACAGAATTCCTTCCACGTGGAAGTTTGTTTCGTTTACTACAGAGGAACACAGGCAAATTAGATTGGAGACGCCGTGTTCATATGGCTTTGGACATTGCGCGAGGCATGAACTATCTTCACCATTGCAATCCACCCATTATTCACCGAGACTTGAAATCGTCGAACCTCTTAATCGATAAAAACTGGACCGTGAAGGTTGGAGATTTTGGTCTATCTCGACTTAAGCATGAGACTTATCTAACAACTAAGACCGGAAAGGGCACGCCTCAATGGATGGCGCCCGAAGTTCTTCGTAACGAGCCCTCAGATGAGAAGTCTGACATATACAGTTTTGGAGTCATATTGTGGGAGCTTGCAACTGAGAAGATCCCTTGGGAAAATCTCAATTCAATGCAGGTCATTGGTGCTGTTGGTTTCATGAACCAACGTCTTGAAATCCCAAAGGACGTGGATCCACAATGGATTTCAATTATTGAAAGCTGCTGGCACAGTGAACCTTCAAACCGGCCATCATTCCAAGTTTTGATAGAAAAGCTGAGAGACTTACAAAGGAAGTATACTATTCAATTACAAGCAGCTCGTTCGGGTGGAGATAACAGCAACAGCAACAACAACAATATCCCTCAAAAGGAAACATAA 2382 45.8 MGTPPAEELLRKVQELEEGQAHLKKEMSKLLLSGTAADSNSDHQIHHHHHHHQRSQSISPQRSRFAATRRRGGTTGGLDGAAAAWKRGSSSFRHSSPLQRESRTRDPMNPAAAAAADGGGGCSGPAAVNFTNKQYLNILQSLGQPVYIFDLNYHIIYWNRAAEIVYGYSAAEALGQDAIELLVDPEDFAITNHVILRVMAGENWTGHLPVKNKMGQKFVVVATNTPFYDDGALIGIICISSDSRPFQDLKIPLSIGSKQQDADSSMVRSRVPVSVKLGLDPQQPLQVAIASKLSNLASKVSNKVKSKIRTGENSLDREGGSGDGYHSDHGHPDAVLCDNRDDANSSGASTPRGDSTAHGAFSQVEEKLSGRLVRDSSDEGKGKPTIQKILSSKAEEWIAKKGLSWPWKGTEQEGGSETRAARFVWPWVQIDQEAEPANHKSSSISGKLEMQQNDGHRAVNNEASGSWSSININSTSSVSSCGSTSSSAVNKVESDMDCLDHEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFKQEVSLMKKLRHPNILLFMGVVTSPQRLCIVTEFLPRGSLFRLLQRNTGKLDWRRRVHMALDIARGMNYLHHCNPPIIHRDLKSSNLLIDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDIYSFGVILWELATEKIPWENLNSMQVIGAVGFMNQRLEIPKDVDPQWISIIESCWHSEPSNRPSFQVLIEKLRDLQRKYTIQLQAARSGGDNSNSNNNNIPQKET* 794
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 16863776 16869162 - CsaV3_6G028600.1 Csa06g01870 533497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01870 793 SUPERFAMILY Protein kinase-like (PK-like) 492 758 IPR011009 -
Csa06g01870 793 Gene3D Transferase(Phosphotransferase) domain 1 586 793 - -
Csa06g01870 793 PRINTS Tyrosine kinase catalytic domain signature 582 595 IPR001245 GO:0004672|GO:0006468
Csa06g01870 793 PRINTS Tyrosine kinase catalytic domain signature 621 639 IPR001245 GO:0004672|GO:0006468
Csa06g01870 793 PRINTS Tyrosine kinase catalytic domain signature 668 678 IPR001245 GO:0004672|GO:0006468
Csa06g01870 793 PRINTS Tyrosine kinase catalytic domain signature 687 709 IPR001245 GO:0004672|GO:0006468
Csa06g01870 793 PRINTS Tyrosine kinase catalytic domain signature 731 753 IPR001245 GO:0004672|GO:0006468
Csa06g01870 793 MobiDBLite consensus disorder prediction 368 382 - -
Csa06g01870 793 MobiDBLite consensus disorder prediction 772 793 - -
Csa06g01870 793 SMART serkin_6 508 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01870 793 MobiDBLite consensus disorder prediction 35 120 - -
Csa06g01870 793 MobiDBLite consensus disorder prediction 302 386 - -
Csa06g01870 793 Pfam Protein tyrosine and serine/threonine kinase 508 760 IPR001245 GO:0004672|GO:0006468
Csa06g01870 793 ProSiteProfiles Protein kinase domain profile. 508 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01870 793 MobiDBLite consensus disorder prediction 342 357 - -
Csa06g01870 793 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 37 781 - -
Csa06g01870 793 CDD PAS 142 242 IPR000014 -
Csa06g01870 793 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 37 781 - -
Csa06g01870 793 SUPERFAMILY PYP-like sensor domain (PAS domain) 135 242 IPR035965 -
Csa06g01870 793 Coils Coil 6 26 - -
Csa06g01870 793 MobiDBLite consensus disorder prediction 305 338 - -
Csa06g01870 793 Gene3D PAS domain 143 245 - -
Csa06g01870 793 TIGRFAM sensory_box: PAS domain S-box protein 133 242 IPR000014 -
Csa06g01870 793 Gene3D Phosphorylase Kinase; domain 1 501 585 - -
Csa06g01870 793 SMART pas_2 133 200 IPR000014 -
Csa06g01870 793 CDD STKc_MAP3K-like 514 760 - -
Csa06g01870 793 Pfam PAS fold 134 239 IPR013767 GO:0006355
Csa06g01870 793 ProSiteProfiles PAS repeat profile. 131 202 IPR000014 -
Csa06g01870 793 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02535 Csa-Chr4:25059511 Csa06g01870 Csa-Chr6:16863776 1.84E-111 dispersed
Csa06g01870 Csa-Chr6:16863776 Csa03g00046 Csa-Chr3:453919 1.85E-67 dispersed
Csa06g01870 Csa-Chr6:16863776 Csa06g02656 Csa-Chr6:23385603 3.57E-105 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78372 PF07714 PK_Tyr_Ser-Thr 5.10E-69 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01870 - - csv:101221874 1430.23