Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01876 ATGTCAATGAACTTATCTCTTCCGATCATCATCTTGATCTTCTTCTTGTTTCTCTCCCATTTCCCCTTTCTTTCCCTTTCTTTTCTCCTTAATCAGAACATCACCCTCTCCGGTGATGCCCATCTCAGAAACAACGCCATTTTTCTCACTCAAGAACGCGACTGCCTTTCCCTTTCTCCAAACTCCTCTTCCTCTGCCTCCGGCTTCGGCTCTGCCGTCTACGTCAATCCCGTTCGCTTTCTTGATTCCTCCACCAATTCTTCTGCTTCTTTCTCCTCTCGTTTCTCCCTCTCCATCCTCCCCACCCCTCTCTGTTCTTTCCCCGATGGTTTCGCCTTCCTCATTGCCTCCGATCCCGAATCTTTTACCCTCTCCAACAGCCATATACCCCTTCCCAACCCCTCTCATAGCTCCCCTTTCTCCTTCATCGCTGTCGAATTCGATACCAACTTCGACTCTAATCTTGGCGACATTAATGACAACCATCTCGGTCTCAATGTCAATTCGCCCACCTCTTTGACCTCTGTGGATTTTCGATCTCATGGCATTGTTCTCAAAAATGGCAGAAAGATTACTGCTTGGATTGAGTATCGAGATGACTCCAAAACGATTCGGGTTTGGGTTGGTTATTCGCAAACGAGACCTGTGAATCCTCTTTTAGCTGCACCGATGGATCTTTCTAAGCAATTTAAGGAGTTTATGTATGTGGGATTCTCTGCTTCCAATGGGCAGGGCTCTGCTCTTTTCATTGTTGATCGTTGGCAGTTCCGAACTTTCGGGTTGCTTCCTTCTTTGAGTCCTGTTGATACCATTAATGAAGGAGCTGGTTGTTTTATGTGTTCGTCGGAGGATTTGAATTCTGATAACAGTCGTTTTGTTGATGCTAGTGAACGGAGGAAGAAGAGTGGCGAAATGAGTCTTGTATTTGGAGGTTTGGCTGCATTTGCTTGTTCTGGTGCTTTAATACTTGGTTTTGTTAGTTATACTTTGATAAAGAAGTTGAGAAGTAGAGTGTGTAGAGGAAGAGAGATTGATAGAACTTGTCTTGTTAAGATGAATAGAATTCCTACAAGATTGTCTCTTGGCGAAATAAAGTTAGCTACAATGGGGTTTAATCAAAACAGAGTTGTTGGGGAAGGTGGTTCTGCTACTGTTTACAAAGGTTCTCTTCCTTCAGGTGTAGAAGTGGCTGTTAAACGTTTCGAGCAAGGTATGGCGAATAACCGTCTACCCAATCCTTTCGCAACGGAGTTTGCAACGATGGTGGGATGTTTACGACACAAGAATTTAGTTCAGCTTCATGGATGGTGTTGTGAAGCAAATGAATTAGTGCTTGTTTATGAGTACTTAGCCAATGGAAGCCTTGCCAAACTTCTTCACGAGACGTCTCCCAATTCACAATTTGTAATTCCATGGAAGAAAAGGGTTTCCATAGTTCTTGGAGTTGCTTCTGCATTGACATATCTTCATGAAGAATGTGAGAGACAAATTATACACAGAGATGTCAAAACTTGCAACATTCTGCTTGATGCAGACTTGAACGCGAAACTCGGTGATTTCGGTTTAGCAGAAGTGTACGAACACAGTTCGTTGACAAGAATAGCAACCATTCCAGCTGGAACAATGGGTATCTGGCACCCGAATACCTTTACTACGGCGTTCCCACCGTGA 1671 43.93 MSMNLSLPIIILIFFLFLSHFPFLSLSFLLNQNITLSGDAHLRNNAIFLTQERDCLSLSPNSSSSASGFGSAVYVNPVRFLDSSTNSSASFSSRFSLSILPTPLCSFPDGFAFLIASDPESFTLSNSHIPLPNPSHSSPFSFIAVEFDTNFDSNLGDINDNHLGLNVNSPTSLTSVDFRSHGIVLKNGRKITAWIEYRDDSKTIRVWVGYSQTRPVNPLLAAPMDLSKQFKEFMYVGFSASNGQGSALFIVDRWQFRTFGLLPSLSPVDTINEGAGCFMCSSEDLNSDNSRFVDASERRKKSGEMSLVFGGLAAFACSGALILGFVSYTLIKKLRSRVCRGREIDRTCLVKMNRIPTRLSLGEIKLATMGFNQNRVVGEGGSATVYKGSLPSGVEVAVKRFEQGMANNRLPNPFATEFATMVGCLRHKNLVQLHGWCCEANELVLVYEYLANGSLAKLLHETSPNSQFVIPWKKRVSIVLGVASALTYLHEECERQIIHRDVKTCNILLDADLNAKLGDFGLAEVYEHSSLTRIATIPAGTMGIWHPNTFTTAFPP* 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 16922002 16923736 - CsaV3_6G029650.1 Csa06g01876 533503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01876 556 SMART serkin_6 371 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01876 556 Gene3D Transferase(Phosphotransferase) domain 1 450 553 - -
Csa06g01876 556 ProSitePatterns Serine/Threonine protein kinases active-site signature. 497 509 IPR008271 GO:0004672|GO:0006468
Csa06g01876 556 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.1 29 552 - -
Csa06g01876 556 PANTHER - 29 552 - -
Csa06g01876 556 SUPERFAMILY Protein kinase-like (PK-like) 352 543 IPR011009 -
Csa06g01876 556 ProSiteProfiles Protein kinase domain profile. 371 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01876 556 Gene3D Phosphorylase Kinase; domain 1 334 449 - -
Csa06g01876 556 SUPERFAMILY Concanavalin A-like lectins/glucanases 13 261 IPR013320 -
Csa06g01876 556 CDD lectin_legume_LecRK_Arcelin_ConA 31 260 IPR001220 GO:0030246
Csa06g01876 556 Pfam Legume lectin domain 27 258 IPR001220 GO:0030246
Csa06g01876 556 Pfam Protein kinase domain 371 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01876 556 ProSitePatterns Protein kinases ATP-binding region signature. 377 399 IPR017441 GO:0005524
Csa06g01876 556 ProSitePatterns Legume lectins beta-chain signature. 143 149 IPR019825 -
Csa06g01876 556 Gene3D - 19 262 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01876 Csa-Chr6:16922002 Csa03g00423 Csa-Chr3:3588410 1.58E-104 dispersed
Csa06g01898 Csa-Chr6:17105850 Csa06g01876 Csa-Chr6:16922002 0 transposed
Csa06g01876 Csa-Chr6:16922002 Csa06g01897 Csa-Chr6:17104953 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78373 PF00139 Lectin_legB 4.90E-48 CL0004 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01876 - - csv:101206470 1006.51