Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01898 ATGTGTTCGTCGGAGGATTTGAATTCTGATAACAGTCGTTTTGTTGATGCTAGTGAACGGAGGAAGAAGAGTGGCGAAATGAGTCTTGTATTTGGAGGTTTGGCTGCATTTGCTTGTTCTGGTGCTTTAATACTTGGTTTTGTTAGTTATACTTTGATAAAGAAGTTGAGAAGTAGAGTGTGTAGAGGAGAGATTGATAGAACTTGTCTTGTTAAGATGAATAGAATTCCTACAAGATTGTCTCTTGGCGAAATAAAGTTAGCTACAATGGGGTTTAATCAAAACAGAGTTGTTGGGGAAGGTGGTTCTGCTACTGTTTACAAAGGTTCTCTTCCTTCAGGTGTAGAAGTGGCTGTTAAACGTTTCGAGCAAGGTATGGCGAATAACCGTCTACCCAATCCTTTCGCAACGGAGTTTGCAACGATGGTGGGATGTTTACGACACAAGAATTTAGTTCAGCTTCATGGATGGTGTTGTGAAGCAAATGAATTAGTGCTTGTTTATGAGTACTTAGCCAATGGAAGCCTTGCCAAACTTCTTCACGAGACGTCTCCCAATTCACAATTTGTAATTCCATGGAAGAAAAGGGTTTCCATAGTTCTTGGAGTTGCTTCTGCATTGACATATCTTCATGAAGAATGTGAGAGACAAATTATACACAGAGATGTCAAAACTTGCAACATTCTGCTTGATGCAGACTTGAACGCGAAACTCGGTGATTTCGGTTTAGCAGAAGTGTACGAACACAGTTCGTTGACAAGAATAGCAACCATTCCAGCTGGAACAATGGGGTATCTGGCACCCGAATACCTTTACTACGGCGTTCCCACCGTGAAAACCGATGTTTACAGCTTTGGTGTGGTGATCCTGGAAGTTGCATCGGGTAAGAGGCCCGTAGATGAAGGCGGGATGGTGCTTGTGGATTGGATTTGGGTTCTATGGGAGTGA 948 42.41 MCSSEDLNSDNSRFVDASERRKKSGEMSLVFGGLAAFACSGALILGFVSYTLIKKLRSRVCRGEIDRTCLVKMNRIPTRLSLGEIKLATMGFNQNRVVGEGGSATVYKGSLPSGVEVAVKRFEQGMANNRLPNPFATEFATMVGCLRHKNLVQLHGWCCEANELVLVYEYLANGSLAKLLHETSPNSQFVIPWKKRVSIVLGVASALTYLHEECERQIIHRDVKTCNILLDADLNAKLGDFGLAEVYEHSSLTRIATIPAGTMGYLAPEYLYYGVPTVKTDVYSFGVVILEVASGKRPVDEGGMVLVDWIWVLWE* 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 17105850 17106797 + CsaV3_6G030860.1 Csa06g01898 533525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01898 315 SUPERFAMILY Protein kinase-like (PK-like) 73 310 IPR011009 -
Csa06g01898 315 Gene3D Phosphorylase Kinase; domain 1 54 170 - -
Csa06g01898 315 SMART serkin_6 92 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01898 315 Gene3D Transferase(Phosphotransferase) domain 1 171 315 - -
Csa06g01898 315 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Csa06g01898 315 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.1 31 314 - -
Csa06g01898 315 ProSiteProfiles Protein kinase domain profile. 92 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01898 315 PANTHER - 31 314 - -
Csa06g01898 315 ProSitePatterns Protein kinases ATP-binding region signature. 98 120 IPR017441 GO:0005524
Csa06g01898 315 Pfam Protein kinase domain 92 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01898 Csa-Chr6:17105850 Csa03g03262 Csa-Chr3:29836435 1.66E-76 dispersed
Csa06g01898 Csa-Chr6:17105850 Csa06g01876 Csa-Chr6:16922002 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78374 PF00069 Pkinase 8.00E-42 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01898 - - csv:116404439 635.18