Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g01917 | ATGGTAACATCAGGGCCACCCACTCCTATGGGTGGTGGTGCACAGTCTGTTTCGCCCTCACTTCTACGATCTAATTCTGGATTGCTGGGTGTTCAAGGTGGTATGCTTCCTTCACAGGCAGCTTTTTCTTCACTTGTATCACCTCGGAATCAGTTCAATAATATGAATATGCTCGGTAATATGTCCAATGTGTCATCTCTCCTTAATCAATCATTTGGAAATGGGGCTCCTAATTCTGGACTTCCATGTCCTGGCAATAACCACCCTGGTGCTGAACCGGACCCTCTTTCTGCTGTGGGCAATGGAATGAGCTTTAATAATCCTTCATCGTCATTTGTAGCATCAAATATGGCAAACCCCGTTTCATCTGTCCAAGGGCAGAATCCACAATTTTCTAACCTTTCTAGCAACCAGTTGCTATCAGATCAGCAGCAGTCGCAGCAACTGGAACCCCAGAATTTCCAACATAGTCAACAGTCGATGGAGCAGTTTTCTGCACTTCAGAGCAATCAACAACCGCAATTTCAAGCAATTCGAGGGTTGCCTGGTGTTGGACCTGTAAAGTTGGAGCCTCAAGTGACTAGCAATGATCAACATGGACAGCAGCAGCAGCAGCAGCAGCATTTGCAAACTTTGAGAAACCTTGGTTCAGTGAAATTGGAATCACAACGACTTCAGTCGATGAGAGGTTTGGCACCAGTAAAAATGGAACCCCAACAATCAGACCAGTCATTATTTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAACAACAGCATCAGCATCCGCATCCGCATCAACAGCAACAGCAATCACAACAATTTCTCCATATGTCTAGACAGTCCTCTCAGGTAGCGGCTGCCCAAATTAATCTAATGCATCAACAAAGGATTTTGCAATTGCAACAACATCAACAACTCTTAAAAAGTATGCCTCCTCAACGGCCACAATTACAACAACATTACCAACAGCAGAACCTTTCTCTGAGATCTCCTGTTAAACCAGGATATGAACCTGGAATGTGTGCCCGACGTCTGACTCATTACATGTATCACCAGCAACACAGACCTGAAGACAACAACATAGATTTCTGGAGGAAATTTGTTAACGAGTACTTTGCACCTCATGCCAAAAAGAAATGGTGTGTTTCCATGTATGGAAGTGGACGACAAACAACAGGAGTGTTTCCTCAGGATGTATGGCATTGTGAAATATGCAACCGCAAGCCTGGGCGTGGCTTTGAAGCAACTGCTGAGGTTCTTCCCAGGCTTTTTAAGATCAAGTATGAAAGTGGTACTATGGAGGAACTACTTTATCTTGACATGCCTCGTGAATATCATAATGCATCTGGTCAGATCGTCTTGGATTATGCAAAAGCAATACAGGAAAGTGTTTTTGAGCAACTTCGTGTTGTCCGCGATGGCCAACTTCGAATCGTTTTTTCTCCAGACCTTAAGATATGTTCTTGGGAATTCTGTGCTCGACGCCATGAAGAACTTATTCCTAGGAGATTGCTGATACCTCAGGTCAGTCACCTTGGAGCAGCAGCTCAAAAATTCCAGTCTGCCATTCAAAACACATCATCCAATTTATCAACGCCTGAATTGCAAAACAATTGTAACATGTTTGTGGCTTCAGCACGACAATTAGCTAAAGCCTTGGAAGTTCCGCTGGTAAATGACTTGGGATATACAAAGAGATATGTACGTTGTCTTCAGATATCCGAAGTGGTTAATAGCATGAAGGACTTGATTGATTACAGCAAAGAAACAGGGATTGGACCAATGGATAGTCTAGCCAAGTTTCCTCGGAGGACAAGTTCATCATCAGGGGTTACGAATCAAGCTCCAATTTCTGACGAACAGCAGCAACAACAATCATCCATAGCCCAGCGCTCGAATAACAACCAGAGTTCTGTCCAGGCTTCTGCAGTACAGCAGCTTACAGCTAGCAATGGTGTGTCCAGTGTAAATAATACCGCCAACCAACCTTCAACATCAAACTCAGCAAGCACCATTGCTGGCCTTCTTCACCAGAATTCTATGAACTCGAGACAGCAGAACTCTATGCCTAATGCTAGCAACTCATATGGGGGAAGTTCTGTTCAGATTCCATCACCTGGTTCTTCCAGTACAGTTCCACCTACGCAACCGAACCCTTCGACATTCCAGCCACCAACTCCCTCATCATCCAACAGTCTTTCACAACCATCACATGCAGTTGCAAAGAATCCCAATCAAATGAGTGCTGCTAATTCTCCGGCAAATATCTCGATGCAGCAACAACCTGCCTTATCTGGAGATGCCGATCCTAGTGAAACACAGTCCTCCGTGCAAAAGATCCTGCAAGAGATGATGATGAACAATCAAATGAATGGGCCAAATAGTCTAGTTGGTGTTGGTTCCGTGGTCAATGATATGAAAAACATGAATGGGGTCTTACCTACAAGTAGTACAGGTCTCAACAATGGCAATTGTATAGGGGGAAATGGAGCGGCAAACGGTGGCTCAGGGATGGGAGGAGGTGGATACGGATCAATGGGAAGTGGGCTAGGGCAGCCTGTGATGGTTAACGGAATGAGGACTGCAATGGGGAATAACACCATTATGAATAGACGCATAGGAATGGCATCGCTTGCTCTAGAACAAAGCATGAATGGTCAACCACAGGATATGGGAAACCAGCTTCTTGGTGGACTAGGGGCTGTAAATGGGTATAGTAATCTCCAATTTGACTGGAAGCCATCCCCATGA | 2766 | 45.05 | MVTSGPPTPMGGGAQSVSPSLLRSNSGLLGVQGGMLPSQAAFSSLVSPRNQFNNMNMLGNMSNVSSLLNQSFGNGAPNSGLPCPGNNHPGAEPDPLSAVGNGMSFNNPSSSFVASNMANPVSSVQGQNPQFSNLSSNQLLSDQQQSQQLEPQNFQHSQQSMEQFSALQSNQQPQFQAIRGLPGVGPVKLEPQVTSNDQHGQQQQQQQHLQTLRNLGSVKLESQRLQSMRGLAPVKMEPQQSDQSLFQQQQQQQQQQQQQQQQQHQHPHPHQQQQQSQQFLHMSRQSSQVAAAQINLMHQQRILQLQQHQQLLKSMPPQRPQLQQHYQQQNLSLRSPVKPGYEPGMCARRLTHYMYHQQHRPEDNNIDFWRKFVNEYFAPHAKKKWCVSMYGSGRQTTGVFPQDVWHCEICNRKPGRGFEATAEVLPRLFKIKYESGTMEELLYLDMPREYHNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSHLGAAAQKFQSAIQNTSSNLSTPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSKETGIGPMDSLAKFPRRTSSSSGVTNQAPISDEQQQQQSSIAQRSNNNQSSVQASAVQQLTASNGVSSVNNTANQPSTSNSASTIAGLLHQNSMNSRQQNSMPNASNSYGGSSVQIPSPGSSSTVPPTQPNPSTFQPPTPSSSNSLSQPSHAVAKNPNQMSAANSPANISMQQQPALSGDADPSETQSSVQKILQEMMMNNQMNGPNSLVGVGSVVNDMKNMNGVLPTSSTGLNNGNCIGGNGAANGGSGMGGGGYGSMGSGLGQPVMVNGMRTAMGNNTIMNRRIGMASLALEQSMNGQPQDMGNQLLGGLGAVNGYSNLQFDWKPSP* | 922 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 17297174 | 17305349 | + | CsaV3_6G031050.1 | Csa06g01917 | 533544 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g01917 | 921 | MobiDBLite | consensus disorder prediction | 120 | 151 | - | - | |
Csa06g01917 | 921 | MobiDBLite | consensus disorder prediction | 181 | 209 | - | - | |
Csa06g01917 | 921 | MobiDBLite | consensus disorder prediction | 599 | 649 | - | - | |
Csa06g01917 | 921 | MobiDBLite | consensus disorder prediction | 78 | 103 | - | - | |
Csa06g01917 | 921 | PANTHER | LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED | 1 | 265 | - | - | |
Csa06g01917 | 921 | PANTHER | LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED | 201 | 920 | - | - | |
Csa06g01917 | 921 | MobiDBLite | consensus disorder prediction | 235 | 286 | - | - | |
Csa06g01917 | 921 | MobiDBLite | consensus disorder prediction | 687 | 714 | - | - | |
Csa06g01917 | 921 | MobiDBLite | consensus disorder prediction | 237 | 286 | - | - | |
Csa06g01917 | 921 | MobiDBLite | consensus disorder prediction | 687 | 756 | - | - | |
Csa06g01917 | 921 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Csa06g01917 | 921 | MobiDBLite | consensus disorder prediction | 191 | 209 | - | - | |
Csa06g01917 | 921 | MobiDBLite | consensus disorder prediction | 715 | 729 | - | - | |
Csa06g01917 | 921 | PANTHER | LIM DOMAIN-BINDING PROTEIN | 201 | 920 | IPR029005 | - | |
Csa06g01917 | 921 | PANTHER | LIM DOMAIN-BINDING PROTEIN | 1 | 265 | IPR029005 | - | |
Csa06g01917 | 921 | MobiDBLite | consensus disorder prediction | 762 | 781 | - | - | |
Csa06g01917 | 921 | MobiDBLite | consensus disorder prediction | 730 | 756 | - | - | |
Csa06g01917 | 921 | MobiDBLite | consensus disorder prediction | 606 | 649 | - | - | |
Csa06g01917 | 921 | Pfam | LIM-domain binding protein | 349 | 603 | IPR029005 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa06g01917 | Csa-Chr6:17297174 | Csa06g02175 | Csa-Chr6:19601789 | 0 | dispersed | |
Csa06g01917 | Csa-Chr6:17297174 | Csa05g00586 | Csa-Chr5:3864305 | 6.23E-115 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g01917 | - | - | csv:101218018 | 1542.32 |