Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01917 ATGGTAACATCAGGGCCACCCACTCCTATGGGTGGTGGTGCACAGTCTGTTTCGCCCTCACTTCTACGATCTAATTCTGGATTGCTGGGTGTTCAAGGTGGTATGCTTCCTTCACAGGCAGCTTTTTCTTCACTTGTATCACCTCGGAATCAGTTCAATAATATGAATATGCTCGGTAATATGTCCAATGTGTCATCTCTCCTTAATCAATCATTTGGAAATGGGGCTCCTAATTCTGGACTTCCATGTCCTGGCAATAACCACCCTGGTGCTGAACCGGACCCTCTTTCTGCTGTGGGCAATGGAATGAGCTTTAATAATCCTTCATCGTCATTTGTAGCATCAAATATGGCAAACCCCGTTTCATCTGTCCAAGGGCAGAATCCACAATTTTCTAACCTTTCTAGCAACCAGTTGCTATCAGATCAGCAGCAGTCGCAGCAACTGGAACCCCAGAATTTCCAACATAGTCAACAGTCGATGGAGCAGTTTTCTGCACTTCAGAGCAATCAACAACCGCAATTTCAAGCAATTCGAGGGTTGCCTGGTGTTGGACCTGTAAAGTTGGAGCCTCAAGTGACTAGCAATGATCAACATGGACAGCAGCAGCAGCAGCAGCAGCATTTGCAAACTTTGAGAAACCTTGGTTCAGTGAAATTGGAATCACAACGACTTCAGTCGATGAGAGGTTTGGCACCAGTAAAAATGGAACCCCAACAATCAGACCAGTCATTATTTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAACAACAGCATCAGCATCCGCATCCGCATCAACAGCAACAGCAATCACAACAATTTCTCCATATGTCTAGACAGTCCTCTCAGGTAGCGGCTGCCCAAATTAATCTAATGCATCAACAAAGGATTTTGCAATTGCAACAACATCAACAACTCTTAAAAAGTATGCCTCCTCAACGGCCACAATTACAACAACATTACCAACAGCAGAACCTTTCTCTGAGATCTCCTGTTAAACCAGGATATGAACCTGGAATGTGTGCCCGACGTCTGACTCATTACATGTATCACCAGCAACACAGACCTGAAGACAACAACATAGATTTCTGGAGGAAATTTGTTAACGAGTACTTTGCACCTCATGCCAAAAAGAAATGGTGTGTTTCCATGTATGGAAGTGGACGACAAACAACAGGAGTGTTTCCTCAGGATGTATGGCATTGTGAAATATGCAACCGCAAGCCTGGGCGTGGCTTTGAAGCAACTGCTGAGGTTCTTCCCAGGCTTTTTAAGATCAAGTATGAAAGTGGTACTATGGAGGAACTACTTTATCTTGACATGCCTCGTGAATATCATAATGCATCTGGTCAGATCGTCTTGGATTATGCAAAAGCAATACAGGAAAGTGTTTTTGAGCAACTTCGTGTTGTCCGCGATGGCCAACTTCGAATCGTTTTTTCTCCAGACCTTAAGATATGTTCTTGGGAATTCTGTGCTCGACGCCATGAAGAACTTATTCCTAGGAGATTGCTGATACCTCAGGTCAGTCACCTTGGAGCAGCAGCTCAAAAATTCCAGTCTGCCATTCAAAACACATCATCCAATTTATCAACGCCTGAATTGCAAAACAATTGTAACATGTTTGTGGCTTCAGCACGACAATTAGCTAAAGCCTTGGAAGTTCCGCTGGTAAATGACTTGGGATATACAAAGAGATATGTACGTTGTCTTCAGATATCCGAAGTGGTTAATAGCATGAAGGACTTGATTGATTACAGCAAAGAAACAGGGATTGGACCAATGGATAGTCTAGCCAAGTTTCCTCGGAGGACAAGTTCATCATCAGGGGTTACGAATCAAGCTCCAATTTCTGACGAACAGCAGCAACAACAATCATCCATAGCCCAGCGCTCGAATAACAACCAGAGTTCTGTCCAGGCTTCTGCAGTACAGCAGCTTACAGCTAGCAATGGTGTGTCCAGTGTAAATAATACCGCCAACCAACCTTCAACATCAAACTCAGCAAGCACCATTGCTGGCCTTCTTCACCAGAATTCTATGAACTCGAGACAGCAGAACTCTATGCCTAATGCTAGCAACTCATATGGGGGAAGTTCTGTTCAGATTCCATCACCTGGTTCTTCCAGTACAGTTCCACCTACGCAACCGAACCCTTCGACATTCCAGCCACCAACTCCCTCATCATCCAACAGTCTTTCACAACCATCACATGCAGTTGCAAAGAATCCCAATCAAATGAGTGCTGCTAATTCTCCGGCAAATATCTCGATGCAGCAACAACCTGCCTTATCTGGAGATGCCGATCCTAGTGAAACACAGTCCTCCGTGCAAAAGATCCTGCAAGAGATGATGATGAACAATCAAATGAATGGGCCAAATAGTCTAGTTGGTGTTGGTTCCGTGGTCAATGATATGAAAAACATGAATGGGGTCTTACCTACAAGTAGTACAGGTCTCAACAATGGCAATTGTATAGGGGGAAATGGAGCGGCAAACGGTGGCTCAGGGATGGGAGGAGGTGGATACGGATCAATGGGAAGTGGGCTAGGGCAGCCTGTGATGGTTAACGGAATGAGGACTGCAATGGGGAATAACACCATTATGAATAGACGCATAGGAATGGCATCGCTTGCTCTAGAACAAAGCATGAATGGTCAACCACAGGATATGGGAAACCAGCTTCTTGGTGGACTAGGGGCTGTAAATGGGTATAGTAATCTCCAATTTGACTGGAAGCCATCCCCATGA 2766 45.05 MVTSGPPTPMGGGAQSVSPSLLRSNSGLLGVQGGMLPSQAAFSSLVSPRNQFNNMNMLGNMSNVSSLLNQSFGNGAPNSGLPCPGNNHPGAEPDPLSAVGNGMSFNNPSSSFVASNMANPVSSVQGQNPQFSNLSSNQLLSDQQQSQQLEPQNFQHSQQSMEQFSALQSNQQPQFQAIRGLPGVGPVKLEPQVTSNDQHGQQQQQQQHLQTLRNLGSVKLESQRLQSMRGLAPVKMEPQQSDQSLFQQQQQQQQQQQQQQQQQHQHPHPHQQQQQSQQFLHMSRQSSQVAAAQINLMHQQRILQLQQHQQLLKSMPPQRPQLQQHYQQQNLSLRSPVKPGYEPGMCARRLTHYMYHQQHRPEDNNIDFWRKFVNEYFAPHAKKKWCVSMYGSGRQTTGVFPQDVWHCEICNRKPGRGFEATAEVLPRLFKIKYESGTMEELLYLDMPREYHNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSHLGAAAQKFQSAIQNTSSNLSTPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSKETGIGPMDSLAKFPRRTSSSSGVTNQAPISDEQQQQQSSIAQRSNNNQSSVQASAVQQLTASNGVSSVNNTANQPSTSNSASTIAGLLHQNSMNSRQQNSMPNASNSYGGSSVQIPSPGSSSTVPPTQPNPSTFQPPTPSSSNSLSQPSHAVAKNPNQMSAANSPANISMQQQPALSGDADPSETQSSVQKILQEMMMNNQMNGPNSLVGVGSVVNDMKNMNGVLPTSSTGLNNGNCIGGNGAANGGSGMGGGGYGSMGSGLGQPVMVNGMRTAMGNNTIMNRRIGMASLALEQSMNGQPQDMGNQLLGGLGAVNGYSNLQFDWKPSP* 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 17297174 17305349 + CsaV3_6G031050.1 Csa06g01917 533544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01917 921 MobiDBLite consensus disorder prediction 120 151 - -
Csa06g01917 921 MobiDBLite consensus disorder prediction 181 209 - -
Csa06g01917 921 MobiDBLite consensus disorder prediction 599 649 - -
Csa06g01917 921 MobiDBLite consensus disorder prediction 78 103 - -
Csa06g01917 921 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 1 265 - -
Csa06g01917 921 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 201 920 - -
Csa06g01917 921 MobiDBLite consensus disorder prediction 235 286 - -
Csa06g01917 921 MobiDBLite consensus disorder prediction 687 714 - -
Csa06g01917 921 MobiDBLite consensus disorder prediction 237 286 - -
Csa06g01917 921 MobiDBLite consensus disorder prediction 687 756 - -
Csa06g01917 921 MobiDBLite consensus disorder prediction 1 21 - -
Csa06g01917 921 MobiDBLite consensus disorder prediction 191 209 - -
Csa06g01917 921 MobiDBLite consensus disorder prediction 715 729 - -
Csa06g01917 921 PANTHER LIM DOMAIN-BINDING PROTEIN 201 920 IPR029005 -
Csa06g01917 921 PANTHER LIM DOMAIN-BINDING PROTEIN 1 265 IPR029005 -
Csa06g01917 921 MobiDBLite consensus disorder prediction 762 781 - -
Csa06g01917 921 MobiDBLite consensus disorder prediction 730 756 - -
Csa06g01917 921 MobiDBLite consensus disorder prediction 606 649 - -
Csa06g01917 921 Pfam LIM-domain binding protein 349 603 IPR029005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01917 Csa-Chr6:17297174 Csa06g02175 Csa-Chr6:19601789 0 dispersed
Csa06g01917 Csa-Chr6:17297174 Csa05g00586 Csa-Chr5:3864305 6.23E-115 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01917 - - csv:101218018 1542.32