Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01923 ATGTCCTCCAGGGATTCTAACGTCCTCTTCAGTGGTGGCGGTATCAGTTTTCTGAATGAAAATCACACTGGAAAGTTCAGCTATGGATATTCTAGTTTCAAGGGCAAAAGAGCTTCGATGGAGGACTTCTATGAAACAAGAATTTCTGAAGTTGATGGGCAGATGGTCGCTTTTTTTGGTGTTTTTGATGGTCATGGAGGTTCCAGAACAGCTGAATACCTTAAGCGCAATCTTTTCAAGAACCTAAGTAGCCATCCAAATTTTATCAAAGACACAAAGACTGCTATTATTGAGGTCTTTAAGCAGACCGATGCCGATTATATCAACGAAGAGAAGGGGCAGCAGAAAGATGCTGGGTCAACTGCATCAACTGCTGTCCTGTTCGGGGATCGTCTCCTTGTTGCAAATGTTGGAGATTCCAGAGTAGTTGCATCTAGAGCTGGTTCAGCTATTCCCCTCTCTATTGATCACAAACCTGATAGGTCAGATGAGCGCCAACGGATTGAACAAGCTGGAGGATTCATTCTTTGGGCAGGAACTTGGCGGGTTGGTGGTATTCTAGCAGTTTCACGTGCCTTCGGAGATAAGCTACTCAAACCGTATGTTGTTGCTGATCCCGAAATTAAGGAAGAAGAACTCGAAGGCGTAGATTTTATTATTATTGCAAGCGATGGACTTTGGAATGTCATATCAAACGAGGAAGCTGTGGCATTGGTACAACACAATCAAGATGCAGAAATGGCATCAAGACAACTAATCCAAGAAGCTTTTTCTCGAGGGAGTACCGACAACATTACATGCGTCATTGTACGTTTTGGTTTGTCGTAA 828 43.36 MSSRDSNVLFSGGGISFLNENHTGKFSYGYSSFKGKRASMEDFYETRISEVDGQMVAFFGVFDGHGGSRTAEYLKRNLFKNLSSHPNFIKDTKTAIIEVFKQTDADYINEEKGQQKDAGSTASTAVLFGDRLLVANVGDSRVVASRAGSAIPLSIDHKPDRSDERQRIEQAGGFILWAGTWRVGGILAVSRAFGDKLLKPYVVADPEIKEEELEGVDFIIIASDGLWNVISNEEAVALVQHNQDAEMASRQLIQEAFSRGSTDNITCVIVRFGLS* 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 17350468 17355244 + CsaV3_6G031110.1 Csa06g01923 533550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01923 275 CDD PP2Cc 26 272 IPR001932 -
Csa06g01923 275 PANTHER PROTEIN PHOSPHATASE 2C 11-RELATED 4 274 - -
Csa06g01923 275 Gene3D - 21 274 IPR036457 -
Csa06g01923 275 PANTHER ALPHABET, ISOFORM E-RELATED 4 274 - -
Csa06g01923 275 ProSitePatterns PPM-type phosphatase domain signature. 58 66 IPR000222 GO:0043169
Csa06g01923 275 Pfam Protein phosphatase 2C 28 265 IPR001932 -
Csa06g01923 275 ProSiteProfiles PPM-type phosphatase domain profile. 27 272 IPR001932 -
Csa06g01923 275 SMART PP2C_4 17 270 IPR001932 -
Csa06g01923 275 SUPERFAMILY PP2C-like 24 273 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02606 Csa-Chr4:25550564 Csa06g01923 Csa-Chr6:17350468 2.25E-130 dispersed
Csa05g00829 Csa-Chr5:6160066 Csa06g01923 Csa-Chr6:17350468 1.40E-45 dispersed
Csa06g00134 Csa-Chr6:877776 Csa06g01923 Csa-Chr6:17350468 7.68E-41 dispersed
Csa06g01923 Csa-Chr6:17350468 Csa07g00485 Csa-Chr7:3515190 1.07E-62 dispersed
Csa06g01923 Csa-Chr6:17350468 Csa03g02203 Csa-Chr3:19119262 1.75E-114 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01923 K17506 - csv:101220053 544.273