Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g01923 | ATGTCCTCCAGGGATTCTAACGTCCTCTTCAGTGGTGGCGGTATCAGTTTTCTGAATGAAAATCACACTGGAAAGTTCAGCTATGGATATTCTAGTTTCAAGGGCAAAAGAGCTTCGATGGAGGACTTCTATGAAACAAGAATTTCTGAAGTTGATGGGCAGATGGTCGCTTTTTTTGGTGTTTTTGATGGTCATGGAGGTTCCAGAACAGCTGAATACCTTAAGCGCAATCTTTTCAAGAACCTAAGTAGCCATCCAAATTTTATCAAAGACACAAAGACTGCTATTATTGAGGTCTTTAAGCAGACCGATGCCGATTATATCAACGAAGAGAAGGGGCAGCAGAAAGATGCTGGGTCAACTGCATCAACTGCTGTCCTGTTCGGGGATCGTCTCCTTGTTGCAAATGTTGGAGATTCCAGAGTAGTTGCATCTAGAGCTGGTTCAGCTATTCCCCTCTCTATTGATCACAAACCTGATAGGTCAGATGAGCGCCAACGGATTGAACAAGCTGGAGGATTCATTCTTTGGGCAGGAACTTGGCGGGTTGGTGGTATTCTAGCAGTTTCACGTGCCTTCGGAGATAAGCTACTCAAACCGTATGTTGTTGCTGATCCCGAAATTAAGGAAGAAGAACTCGAAGGCGTAGATTTTATTATTATTGCAAGCGATGGACTTTGGAATGTCATATCAAACGAGGAAGCTGTGGCATTGGTACAACACAATCAAGATGCAGAAATGGCATCAAGACAACTAATCCAAGAAGCTTTTTCTCGAGGGAGTACCGACAACATTACATGCGTCATTGTACGTTTTGGTTTGTCGTAA | 828 | 43.36 | MSSRDSNVLFSGGGISFLNENHTGKFSYGYSSFKGKRASMEDFYETRISEVDGQMVAFFGVFDGHGGSRTAEYLKRNLFKNLSSHPNFIKDTKTAIIEVFKQTDADYINEEKGQQKDAGSTASTAVLFGDRLLVANVGDSRVVASRAGSAIPLSIDHKPDRSDERQRIEQAGGFILWAGTWRVGGILAVSRAFGDKLLKPYVVADPEIKEEELEGVDFIIIASDGLWNVISNEEAVALVQHNQDAEMASRQLIQEAFSRGSTDNITCVIVRFGLS* | 276 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 17350468 | 17355244 | + | CsaV3_6G031110.1 | Csa06g01923 | 533550 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g01923 | 275 | CDD | PP2Cc | 26 | 272 | IPR001932 | - | |
Csa06g01923 | 275 | PANTHER | PROTEIN PHOSPHATASE 2C 11-RELATED | 4 | 274 | - | - | |
Csa06g01923 | 275 | Gene3D | - | 21 | 274 | IPR036457 | - | |
Csa06g01923 | 275 | PANTHER | ALPHABET, ISOFORM E-RELATED | 4 | 274 | - | - | |
Csa06g01923 | 275 | ProSitePatterns | PPM-type phosphatase domain signature. | 58 | 66 | IPR000222 | GO:0043169 | |
Csa06g01923 | 275 | Pfam | Protein phosphatase 2C | 28 | 265 | IPR001932 | - | |
Csa06g01923 | 275 | ProSiteProfiles | PPM-type phosphatase domain profile. | 27 | 272 | IPR001932 | - | |
Csa06g01923 | 275 | SMART | PP2C_4 | 17 | 270 | IPR001932 | - | |
Csa06g01923 | 275 | SUPERFAMILY | PP2C-like | 24 | 273 | IPR036457 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa04g02606 | Csa-Chr4:25550564 | Csa06g01923 | Csa-Chr6:17350468 | 2.25E-130 | dispersed | |
Csa05g00829 | Csa-Chr5:6160066 | Csa06g01923 | Csa-Chr6:17350468 | 1.40E-45 | dispersed | |
Csa06g00134 | Csa-Chr6:877776 | Csa06g01923 | Csa-Chr6:17350468 | 7.68E-41 | dispersed | |
Csa06g01923 | Csa-Chr6:17350468 | Csa07g00485 | Csa-Chr7:3515190 | 1.07E-62 | dispersed | |
Csa06g01923 | Csa-Chr6:17350468 | Csa03g02203 | Csa-Chr3:19119262 | 1.75E-114 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g01923 | K17506 | - | csv:101220053 | 544.273 |