Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01935 ATGGGACGTCCAACCGCCAAGAAGCTTGTGCCACTCATCATCGCCATCGTGGTAAACATAGCCATCTTTTCAGCAGCGGTCTCGTCGTCGCCAGTACCTTCTCTAGCCAAACTCGGGTGTGAAAGTAAGTGTGGGGACGTGGAAATTCCATTTCCATTCGGGATGAGCGACAACTGTTATCTCAACATTAATTTCTCAATCACATGCAACCATACCCATTTCACGCCTGCAAAGCCATTTCTAATGAACAGCAACGTTGAAGTAACCAATATATCGCTACATGGCGAGCTCCACGTCTTGAACTACGTAGCTAGAGCTTGTTACTCAGAAGATGGTTCTGCTGATATCAAGAACAGACCCAGTATTAGGGTCCCCATGTTCACAATTTCCAACACCAAGAACAAGTTCACTGTCATCGGCTGCGATACTTACGCCTATATTTCCGGTGAACTTGACGGGGAATCCTACAGAAGTGGGTGCATGGCGTTGTGTGGAACCTTTCGTAAAAATATAAAAGATGGGTCATGCTGGAGTGGGTGTTGTCAGTTAGAGATTCCTAAAGGCCTACAAAAATTAGCGTTGGAAGTTGGAAGCTTCCATAATTATACTGAACCAGAAAATAAAAGCAACTTGAACTTGAGTCAATGTGGGTATGCTTTTGTAATCGAACAAAACATTTTTAATTTCAAAAAAAGTTATATCAATAACTACACGGAAGAGAAAGTCCCGCTTGTGCTTGATTGGAAGATAAAACATGAAAATTGTTCAACAGACAAATGCAAATGTGGACAAAAGAGTGAAAAGATACTTGAGGATGGATCTAAATATTATCGTTGTAAGTGTCCGAATGGTTATCACGGAAATCCTTATCTGGACGAAGGTTGTCAAGATACAAATGAATGCAAACTCGGAACCCATCAGTGTGTATCCAACGATATGTGTGAAAACGCACCAGAAGGAACCTATACCTGCTATTGTCCTGAGAATTATGAAGGAGATGGAAAAGAGGGGGGAACAGGTTGCAGAAAAAAACATTCCAACTCCAAGTTCATTAAAATTGCCACTGGTGAGAGCCTAGGAACTGGAGTTGGAATCACAGTTTTGCTAATTGCTATTTCTTGGTTATACTTGGGTTACAAGAAGTGGAAGTTCATCCAACGGAAAGAAGAGTTTTTCAAGAAAAATGGAGGCACCATGCTTCAACAACACCTTTCTCAGTGGCAATCACCTACTGATACAGTTAGAATTTTCAGCCAAGAGGAGTTGGAGAAAGCTACAAACAAGTTCAATGAAAGCACGGTGGTAGGAAAAGGCGGCTACGGCACCGTTCACAAAGGAGTCTTAGACGATGGTTCGGTTATAGCCATTAAGAAATCACAATTACTTGACCAATCTCAAACTTCCCAATTCATCAACGAAGTCATTGTTCTGTCCCAAGTCAACCACCGTAACGTGGTCAAGCTCTTAGGGTGTTGTTTAGAAACACAAGTTCCATTGTTGGTGTATGAGTTCATCACCAATGGCACACTCTTTGATCACATCCATGATCGGACTAAGTACTCTAATCATATACCTTGGGAAGCTCGCTTGAGAATAGCTTCAGAAACTGCAGGGGTCATTTCGTATTTGCACTCTTCAGCTTCTACCCCAGTTATCCACAGGGATATCAAATCCACTAACATACTTTTGGACCATAATTTCACTGCAAAGGTGTCGGATTTCGGTGCCTCCAAGTTGGTTCCAATGGATCAAACTCAATTATCCACCATGGTGCAAGGGACTCTTGGGTATTTGGATCCTGAATACTTGTTGAAAAGTGAGTTGACGGAGAAGAGCGATGTGTACAGCTTTGGAATAGTGCTTCTAGAGCTTATAACTGGAAAGAAGGCAGTGTGTTTTGATGGGCCAGAGGCGGAGAGGAATCTAGCAATGTATGTTCTTTGTGCAATGAAAGAAGATCGTTTAGCAGAAGTTGTGGATAAGGAAATGGTGATGGATGAAGGAAAGTTGAATCAAATAAAAGAAGTATCAAAGATAGCGAAAGAGTGTGTGAGAGTAAGAGGGGAGGAGCGACCCAACATGAAAGAGGTGGCTATGGAGTTAGAGGGACTAAAAGTGATGCAGGTTCAACATTCATGGATTAAAAACAATTTATCCAACTCAGAAGAGATGATAAGTTTATTGGGTGAAACTTCAAACTCCACCCAATTTCTTGTCAGCAGCCGTATGAATTCTACGAGCAATAGTATAACGACTGACATTTTGACTGCACATGTCCCAGATGCAAGATGA 2292 41.88 MGRPTAKKLVPLIIAIVVNIAIFSAAVSSSPVPSLAKLGCESKCGDVEIPFPFGMSDNCYLNINFSITCNHTHFTPAKPFLMNSNVEVTNISLHGELHVLNYVARACYSEDGSADIKNRPSIRVPMFTISNTKNKFTVIGCDTYAYISGELDGESYRSGCMALCGTFRKNIKDGSCWSGCCQLEIPKGLQKLALEVGSFHNYTEPENKSNLNLSQCGYAFVIEQNIFNFKKSYINNYTEEKVPLVLDWKIKHENCSTDKCKCGQKSEKILEDGSKYYRCKCPNGYHGNPYLDEGCQDTNECKLGTHQCVSNDMCENAPEGTYTCYCPENYEGDGKEGGTGCRKKHSNSKFIKIATGESLGTGVGITVLLIAISWLYLGYKKWKFIQRKEEFFKKNGGTMLQQHLSQWQSPTDTVRIFSQEELEKATNKFNESTVVGKGGYGTVHKGVLDDGSVIAIKKSQLLDQSQTSQFINEVIVLSQVNHRNVVKLLGCCLETQVPLLVYEFITNGTLFDHIHDRTKYSNHIPWEARLRIASETAGVISYLHSSASTPVIHRDIKSTNILLDHNFTAKVSDFGASKLVPMDQTQLSTMVQGTLGYLDPEYLLKSELTEKSDVYSFGIVLLELITGKKAVCFDGPEAERNLAMYVLCAMKEDRLAEVVDKEMVMDEGKLNQIKEVSKIAKECVRVRGEERPNMKEVAMELEGLKVMQVQHSWIKNNLSNSEEMISLLGETSNSTQFLVSSRMNSTSNSITTDILTAHVPDAR* 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 17444878 17448536 - CsaV3_6G031230.1 Csa06g01935 533562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01935 763 Gene3D Transferase(Phosphotransferase) domain 1 505 724 - -
Csa06g01935 763 SUPERFAMILY EGF/Laminin 295 334 - -
Csa06g01935 763 Pfam Protein tyrosine and serine/threonine kinase 433 701 IPR001245 GO:0004672|GO:0006468
Csa06g01935 763 ProSitePatterns Protein kinases ATP-binding region signature. 435 458 IPR017441 GO:0005524
Csa06g01935 763 ProSiteProfiles EGF-like domain profile. 297 336 IPR000742 -
Csa06g01935 763 SMART serkin_6 429 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01935 763 ProSiteProfiles Protein kinase domain profile. 429 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01935 763 ProSitePatterns Serine/Threonine protein kinases active-site signature. 551 563 IPR008271 GO:0004672|GO:0006468
Csa06g01935 763 Pfam Wall-associated receptor kinase galacturonan-binding 40 95 IPR025287 GO:0030247
Csa06g01935 763 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 22 728 - -
Csa06g01935 763 SUPERFAMILY Protein kinase-like (PK-like) 407 702 IPR011009 -
Csa06g01935 763 CDD STKc_IRAK 435 704 - -
Csa06g01935 763 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 22 728 IPR045274 GO:0007166
Csa06g01935 763 Gene3D Phosphorylase Kinase; domain 1 401 504 - -
Csa06g01935 763 Gene3D Plasmodium vivax P25 domain 222 349 - -
Csa06g01935 763 SMART egfca_6 297 342 IPR001881 GO:0005509
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01935 Csa-Chr6:17444878 Csa06g01939 Csa-Chr6:17512737 0 dispersed
Csa06g01935 Csa-Chr6:17444878 Csa06g01937 Csa-Chr6:17460747 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78376 PF07714 PK_Tyr_Ser-Thr 2.00E-45 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01935 - - cmos:111461403 889.797